Difference between revisions of "TSS:Hg 106723.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.175 |distance_to_tss=843 |entrez_id=100505761 |gc_percent=0.781095 |gene_alias=- |gene_description=RPARP antisense RNA 1 |gene_name=RPARP-AS1 |gene_...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000596045.1:-3 uc057vql.1:-3 ENST00000596366.1:-80 uc057vqk.1:-80 ENST00000594818.1:-441 uc057vqj.1:-441 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.175 | |cpg_percent=0.175 | ||
| + | |distance=-3 | ||
|distance_to_tss=843 | |distance_to_tss=843 | ||
| + | |end=102450687 | ||
|entrez_id=100505761 | |entrez_id=100505761 | ||
|gc_percent=0.781095 | |gc_percent=0.781095 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=RPARP antisense RNA 1 | |gene_description=RPARP antisense RNA 1 | ||
| − | |gene_name=RPARP-AS1 | + | |gene_id=100505761 |
| + | |gene_name=RPARP antisense RNA 1 | ||
| + | |gene_source=HGNC:45238 | ||
| + | |gene_symbol=RPARP-AS1 | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:45238 | ||
|nearest_ensembl=ENSG00000269609 | |nearest_ensembl=ENSG00000269609 | ||
|nearest_promoter_id=NR_038937 | |nearest_promoter_id=NR_038937 | ||
|nearest_refseq=NR_038937 | |nearest_refseq=NR_038937 | ||
|nearest_unigene=Hs.656457 | |nearest_unigene=Hs.656457 | ||
| + | |num_trans=6 | ||
| + | |species=human | ||
| + | |start=102450633 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000596045.1 uc057vql.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_106723.1 | |tss_id=hg_106723.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 22:30, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000596045.1 uc057vql.1 |
|---|---|
| Distance: | -3 |
| Num_trans: | 6 |
| All_trans: | ENST00000596045.1:-3 uc057vql.1:-3 ENST00000596366.1:-80 uc057vqk.1:-80 ENST00000594818.1:-441 uc057vqj.1:-441 |
TATA-Box annotation
| Distance to TSS: | 843 |
|---|---|
| Nearest PromoterID: | NR_038937 |
| Entrez ID: | 100505761 |
| Nearest Unigene: | Hs.656457 |
| Nearest Refseq: | NR_038937 |
| Nearest Ensembl: | ENSG00000269609 |
| Gene Name: | RPARP antisense RNA 1 |
| Gene Alias: | - |
| Gene Description: | RPARP antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.175 |
| GC%: | 0.781095 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
