Difference between revisions of "TSS:Hg 107315.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.04 |distance_to_tss=733 |entrez_id=2869 |gc_percent=0.517413 |gene_alias=GPRK5 |gene_description=G protein-coupled receptor kinase 5 |gene_name=GRK5...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=AK298261:0 ENST00000421206.1:107 uc057wie.1:107 AB590773:-494 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| + | |distance=0 | ||
|distance_to_tss=733 | |distance_to_tss=733 | ||
| + | |end=119208424 | ||
|entrez_id=2869 | |entrez_id=2869 | ||
|gc_percent=0.517413 | |gc_percent=0.517413 | ||
|gene_alias=GPRK5 | |gene_alias=GPRK5 | ||
|gene_description=G protein-coupled receptor kinase 5 | |gene_description=G protein-coupled receptor kinase 5 | ||
| − | |gene_name=GRK5 | + | |gene_id=2869 |
| + | |gene_name=G protein-coupled receptor kinase 5 | ||
| + | |gene_source=HGNC:4544 | ||
| + | |gene_symbol=GRK5 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:4544 | ||
|nearest_ensembl=ENSG00000198873 | |nearest_ensembl=ENSG00000198873 | ||
|nearest_promoter_id=NM_005308 | |nearest_promoter_id=NM_005308 | ||
|nearest_refseq=NM_005308 | |nearest_refseq=NM_005308 | ||
|nearest_unigene=Hs.524625 | |nearest_unigene=Hs.524625 | ||
| + | |num_trans=4 | ||
| + | |species=human | ||
| + | |start=119208411 | ||
| + | |strand=+ | ||
|tata_box="68(GCCTTTTAAAGG,-,0.00),69(CCTTTTAAAGGC,+,0.00),70(CTTTTAAAGGCA,+,0.00)" | |tata_box="68(GCCTTTTAAAGG,-,0.00),69(CCTTTTAAAGGC,+,0.00),70(CTTTTAAAGGCA,+,0.00)" | ||
| + | |transcript_name=AK298261 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_107315.1 | |tss_id=hg_107315.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B4DPB3 | ||
}} | }} | ||
Revision as of 22:56, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK298261 |
|---|---|
| Distance: | 0 |
| Num_trans: | 4 |
| All_trans: | AK298261:0 ENST00000421206.1:107 uc057wie.1:107 AB590773:-494 |
TATA-Box annotation
| Distance to TSS: | 733 |
|---|---|
| Nearest PromoterID: | NM_005308 |
| Entrez ID: | 2869 |
| Nearest Unigene: | Hs.524625 |
| Nearest Refseq: | NM_005308 |
| Nearest Ensembl: | ENSG00000198873 |
| Gene Name: | G protein-coupled receptor kinase 5 |
| Gene Alias: | GPRK5 |
| Gene Description: | G protein-coupled receptor kinase 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.517413 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "68(GCCTTTTAAAGG,-,0.00),69(CCTTTTAAAGGC,+,0.00),70(CTTTTAAAGGCA,+,0.00)" |
