Difference between revisions of "TSS:Hg 107444.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.155 |distance_to_tss=51 |entrez_id=59338 |gc_percent=0.771144 |gene_alias=TAPP1 |gene_description=pleckstrin homology domain containing A1 |gene_nam...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=NM_001001974:-43 AK314660:54 ENST00000494222.5:59 ENST00000368990.7:59 uc057wnh.1:59 uc001lge.3:59 BC001136:67 ENST00000368989.6:123 uc057wni.1:123 ENST00000463663.6:197 uc057wnj.1:197 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.155 | |cpg_percent=0.155 | ||
| + | |distance=-43 | ||
|distance_to_tss=51 | |distance_to_tss=51 | ||
| + | |end=122374637 | ||
|entrez_id=59338 | |entrez_id=59338 | ||
|gc_percent=0.771144 | |gc_percent=0.771144 | ||
|gene_alias=TAPP1 | |gene_alias=TAPP1 | ||
|gene_description=pleckstrin homology domain containing A1 | |gene_description=pleckstrin homology domain containing A1 | ||
| − | |gene_name=PLEKHA1 | + | |gene_id=59338 |
| + | |gene_name=pleckstrin homology domain containing A1 | ||
| + | |gene_source=HGNC:14335 | ||
| + | |gene_symbol=PLEKHA1 | ||
| + | |gene_synonyms=TAPP1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:14335 | ||
|nearest_ensembl=ENSG00000107679 | |nearest_ensembl=ENSG00000107679 | ||
|nearest_promoter_id=NM_001330178 | |nearest_promoter_id=NM_001330178 | ||
|nearest_refseq=NM_021622 | |nearest_refseq=NM_021622 | ||
|nearest_unigene=Hs.643512 | |nearest_unigene=Hs.643512 | ||
| + | |num_trans=11 | ||
| + | |species=human | ||
| + | |start=122374620 | ||
| + | |strand=+ | ||
| + | |transcript_name=NM_001001974 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_107444.1 | |tss_id=hg_107444.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q9HB21 | ||
}} | }} | ||
Revision as of 23:01, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_001001974 |
|---|---|
| Distance: | -43 |
| Num_trans: | 11 |
| All_trans: | NM_001001974:-43 AK314660:54 ENST00000494222.5:59 ENST00000368990.7:59 uc057wnh.1:59 uc001lge.3:59 BC001136:67 ENST00000368989.6:123 uc057wni.1:123 ENST00000463663.6:197 uc057wnj.1:197 |
TATA-Box annotation
| Distance to TSS: | 51 |
|---|---|
| Nearest PromoterID: | NM_001330178 |
| Entrez ID: | 59338 |
| Nearest Unigene: | Hs.643512 |
| Nearest Refseq: | NM_021622 |
| Nearest Ensembl: | ENSG00000107679 |
| Gene Name: | pleckstrin homology domain containing A1 |
| Gene Alias: | TAPP1 |
| Gene Description: | pleckstrin homology domain containing A1 |
| Gene Type: | protein-coding |
| CpG%: | 0.155 |
| GC%: | 0.771144 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
