Difference between revisions of "TSS:Hg 107634.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.16 |distance_to_tss=75 |entrez_id=5791 |gc_percent=0.78607 |gene_alias=HPTPE|PTPE|R-PTP-EPSILON |gene_description="protein tyrosine phosphatase, rec...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PTPE= | ||
| + | |R-PTP-EPSILON= | ||
| + | |all_trans=AF406557:-2 ENST00000442830.5:7 uc057wuo.1:7 BC050062:8 ENST00000254667.7:-67 NM_001316676:-67 NM_006504:-67 uc001lkb.4:-67 BC031078:-67 X54134:144 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.16 | |cpg_percent=0.16 | ||
| + | |distance=-2 | ||
|distance_to_tss=75 | |distance_to_tss=75 | ||
| + | |end=127907145 | ||
|entrez_id=5791 | |entrez_id=5791 | ||
|gc_percent=0.78607 | |gc_percent=0.78607 | ||
|gene_alias=HPTPE|PTPE|R-PTP-EPSILON | |gene_alias=HPTPE|PTPE|R-PTP-EPSILON | ||
|gene_description="protein tyrosine phosphatase, receptor type E" | |gene_description="protein tyrosine phosphatase, receptor type E" | ||
| − | |gene_name=PTPRE | + | |gene_id=5791 |
| + | |gene_name="protein tyrosine phosphatase, receptor type E" | ||
| + | |gene_source=HGNC:9669 | ||
| + | |gene_symbol=PTPRE | ||
| + | |gene_synonyms=PTPE | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:9669 | ||
|nearest_ensembl=ENSG00000132334 | |nearest_ensembl=ENSG00000132334 | ||
|nearest_promoter_id=NM_001316676 | |nearest_promoter_id=NM_001316676 | ||
|nearest_refseq=NM_006504 | |nearest_refseq=NM_006504 | ||
|nearest_unigene=Hs.127022 | |nearest_unigene=Hs.127022 | ||
| + | |num_trans=10 | ||
| + | |species=human | ||
| + | |start=127907127 | ||
| + | |strand=+ | ||
| + | |transcript_name=AF406557 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_107634.1 | |tss_id=hg_107634.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q96P81 | ||
}} | }} | ||
Revision as of 23:10, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AF406557 |
|---|---|
| Distance: | -2 |
| Num_trans: | 10 |
| All_trans: | AF406557:-2 ENST00000442830.5:7 uc057wuo.1:7 BC050062:8 ENST00000254667.7:-67 NM_001316676:-67 NM_006504:-67 uc001lkb.4:-67 BC031078:-67 X54134:144 |
TATA-Box annotation
| Distance to TSS: | 75 |
|---|---|
| Nearest PromoterID: | NM_001316676 |
| Entrez ID: | 5791 |
| Nearest Unigene: | Hs.127022 |
| Nearest Refseq: | NM_006504 |
| Nearest Ensembl: | ENSG00000132334 |
| Gene Name: | "protein tyrosine phosphatase, receptor type E" |
| Gene Alias: | HPTPE |
| Gene Description: | "protein tyrosine phosphatase, receptor type E" |
| Gene Type: | protein-coding |
| CpG%: | 0.16 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
