Difference between revisions of "TSS:Hg 107653.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.035 |distance_to_tss=86 |entrez_id=5791 |gc_percent=0.621891 |gene_alias=HPTPE|PTPE|R-PTP-EPSILON |gene_description="protein tyrosine phosphatase, r...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PTPE= | ||
| + | |R-PTP-EPSILON= | ||
| + | |all_trans=ENST00000479896.1:0 uc057wuw.1:0 AJ430580:0 AJ315969:0 ENST00000495530.5:-1 uc057wuv.1:-1 ENST00000487428.1:-11 uc057wuu.1:-11 U36623:-17 AK290414:-17 BC071573:-19 ENST00000306042.9:-60 uc001lkd.4:-60 NM_130435:-81 BX648180:-87 ENST00000467366.1:-224 uc057wut.1:-224 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| + | |distance=0 | ||
|distance_to_tss=86 | |distance_to_tss=86 | ||
| + | |end=128047641 | ||
|entrez_id=5791 | |entrez_id=5791 | ||
|gc_percent=0.621891 | |gc_percent=0.621891 | ||
|gene_alias=HPTPE|PTPE|R-PTP-EPSILON | |gene_alias=HPTPE|PTPE|R-PTP-EPSILON | ||
|gene_description="protein tyrosine phosphatase, receptor type E" | |gene_description="protein tyrosine phosphatase, receptor type E" | ||
| − | |gene_name=PTPRE | + | |gene_id=5791 |
| + | |gene_name="protein tyrosine phosphatase, receptor type E" | ||
| + | |gene_source=HGNC:9669 | ||
| + | |gene_symbol=PTPRE | ||
| + | |gene_synonyms=PTPE | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:9669 | ||
|nearest_ensembl=ENSG00000132334 | |nearest_ensembl=ENSG00000132334 | ||
|nearest_promoter_id=NM_001323357 | |nearest_promoter_id=NM_001323357 | ||
|nearest_refseq=NM_006504 | |nearest_refseq=NM_006504 | ||
|nearest_unigene=Hs.127022 | |nearest_unigene=Hs.127022 | ||
| + | |num_trans=17 | ||
| + | |species=human | ||
| + | |start=128047629 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000479896.1 uc057wuw.1 AJ430580 AJ315969 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_107653.1 | |tss_id=hg_107653.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q8TE48 S4R2Y5 | ||
}} | }} | ||
Revision as of 23:10, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000479896.1 uc057wuw.1 AJ430580 AJ315969 |
|---|---|
| Distance: | 0 |
| Num_trans: | 17 |
| All_trans: | ENST00000479896.1:0 uc057wuw.1:0 AJ430580:0 AJ315969:0 ENST00000495530.5:-1 uc057wuv.1:-1 ENST00000487428.1:-11 uc057wuu.1:-11 U36623:-17 AK290414:-17 BC071573:-19 ENST00000306042.9:-60 uc001lkd.4:-60 NM_130435:-81 BX648180:-87 ENST00000467366.1:-224 uc057wut.1:-224 |
TATA-Box annotation
| Distance to TSS: | 86 |
|---|---|
| Nearest PromoterID: | NM_001323357 |
| Entrez ID: | 5791 |
| Nearest Unigene: | Hs.127022 |
| Nearest Refseq: | NM_006504 |
| Nearest Ensembl: | ENSG00000132334 |
| Gene Name: | "protein tyrosine phosphatase, receptor type E" |
| Gene Alias: | HPTPE |
| Gene Description: | "protein tyrosine phosphatase, receptor type E" |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.621891 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
