Difference between revisions of "TSS:Hg 108309.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.195 |distance_to_tss=-25980 |entrez_id=222389 |gc_percent=0.870647 |gene_alias=C10orf30 |gene_description=BEN domain containing 7 |gene_name=BEND7 |...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000466271.1:-4 uc057ruh.1:-4 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.195 | |cpg_percent=0.195 | ||
| + | |distance=-4 | ||
|distance_to_tss=-25980 | |distance_to_tss=-25980 | ||
| + | |end=13528970 | ||
|entrez_id=222389 | |entrez_id=222389 | ||
|gc_percent=0.870647 | |gc_percent=0.870647 | ||
|gene_alias=C10orf30 | |gene_alias=C10orf30 | ||
|gene_description=BEN domain containing 7 | |gene_description=BEN domain containing 7 | ||
| − | |gene_name=BEND7 | + | |gene_id=222389 |
| + | |gene_name=BEN domain containing 7 | ||
| + | |gene_source=HGNC:23514 | ||
| + | |gene_symbol=BEND7 | ||
| + | |gene_synonyms=FLJ40283 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:23514 | ||
|nearest_ensembl=ENSG00000165626 | |nearest_ensembl=ENSG00000165626 | ||
|nearest_promoter_id=NM_152751 | |nearest_promoter_id=NM_152751 | ||
|nearest_refseq=NM_152751 | |nearest_refseq=NM_152751 | ||
|nearest_unigene=Hs.498740 | |nearest_unigene=Hs.498740 | ||
| + | |num_trans=2 | ||
| + | |species=human | ||
| + | |start=13528942 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000466271.1 uc057ruh.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_108309.1 | |tss_id=hg_108309.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 23:39, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000466271.1 uc057ruh.1 |
|---|---|
| Distance: | -4 |
| Num_trans: | 2 |
| All_trans: | ENST00000466271.1:-4 uc057ruh.1:-4 |
TATA-Box annotation
| Distance to TSS: | -25980 |
|---|---|
| Nearest PromoterID: | NM_152751 |
| Entrez ID: | 222389 |
| Nearest Unigene: | Hs.498740 |
| Nearest Refseq: | NM_152751 |
| Nearest Ensembl: | ENSG00000165626 |
| Gene Name: | BEN domain containing 7 |
| Gene Alias: | C10orf30 |
| Gene Description: | BEN domain containing 7 |
| Gene Type: | protein-coding |
| CpG%: | 0.195 |
| GC%: | 0.870647 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
