Difference between revisions of "TSS:Hg 109290.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=82 |entrez_id=143162 |gc_percent=0.597015 |gene_alias=PDZD5C|PDZK4|PDZK5C |gene_description=FERM and PDZ domain containing 2 |ge...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PDZK4= | ||
| + | |PDZK5C= | ||
| + | |all_trans=ENST00000468556.1:17 uc057tcp.1:17 ENST00000492045.1:59 uc057tcq.1:59 ENST00000305531.3:-76 NM_001318191:-76 uc001jgh.5:-76 AK123038:-76 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| + | |distance=17 | ||
|distance_to_tss=82 | |distance_to_tss=82 | ||
| + | |end=48251681 | ||
|entrez_id=143162 | |entrez_id=143162 | ||
|gc_percent=0.597015 | |gc_percent=0.597015 | ||
|gene_alias=PDZD5C|PDZK4|PDZK5C | |gene_alias=PDZD5C|PDZK4|PDZK5C | ||
|gene_description=FERM and PDZ domain containing 2 | |gene_description=FERM and PDZ domain containing 2 | ||
| − | |gene_name=FRMPD2 | + | |gene_id=143162 |
| + | |gene_name=FERM and PDZ domain containing 2 | ||
| + | |gene_source=HGNC:28572 | ||
| + | |gene_symbol=FRMPD2 | ||
| + | |gene_synonyms=MGC35285 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:28572 | ||
|nearest_ensembl=ENSG00000170324 | |nearest_ensembl=ENSG00000170324 | ||
|nearest_promoter_id=NM_001318191 | |nearest_promoter_id=NM_001318191 | ||
|nearest_refseq=NM_152428 | |nearest_refseq=NM_152428 | ||
|nearest_unigene=Hs.664786 | |nearest_unigene=Hs.664786 | ||
| + | |num_trans=8 | ||
| + | |species=human | ||
| + | |start=48251669 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000468556.1 uc057tcp.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_109290.1 | |tss_id=hg_109290.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 00:21, 9 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000468556.1 uc057tcp.1 |
|---|---|
| Distance: | 17 |
| Num_trans: | 8 |
| All_trans: | ENST00000468556.1:17 uc057tcp.1:17 ENST00000492045.1:59 uc057tcq.1:59 ENST00000305531.3:-76 NM_001318191:-76 uc001jgh.5:-76 AK123038:-76 |
TATA-Box annotation
| Distance to TSS: | 82 |
|---|---|
| Nearest PromoterID: | NM_001318191 |
| Entrez ID: | 143162 |
| Nearest Unigene: | Hs.664786 |
| Nearest Refseq: | NM_152428 |
| Nearest Ensembl: | ENSG00000170324 |
| Gene Name: | FERM and PDZ domain containing 2 |
| Gene Alias: | PDZD5C |
| Gene Description: | FERM and PDZ domain containing 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.597015 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
