Difference between revisions of "TSS:Hg 109296.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.02 |distance_to_tss=63 |entrez_id=143162 |gc_percent=0.587065 |gene_alias=PDZD5C|PDZK4|PDZK5C |gene_description=FERM and PDZ domain containing 2 |ge...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PDZK4= | ||
| + | |PDZK5C= | ||
| + | |all_trans=ENST00000374201.7:-23 uc001jgi.5:-23 CR749241:-23 NM_001018071:-51 AK303923:146 ENST00000486151.5:149 uc057tcm.1:149 AK131386:149 BC156408:258 BC157131:258 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| + | |distance=-23 | ||
|distance_to_tss=63 | |distance_to_tss=63 | ||
| + | |end=48274847 | ||
|entrez_id=143162 | |entrez_id=143162 | ||
|gc_percent=0.587065 | |gc_percent=0.587065 | ||
|gene_alias=PDZD5C|PDZK4|PDZK5C | |gene_alias=PDZD5C|PDZK4|PDZK5C | ||
|gene_description=FERM and PDZ domain containing 2 | |gene_description=FERM and PDZ domain containing 2 | ||
| − | |gene_name=FRMPD2 | + | |gene_id=143162 |
| + | |gene_name=FERM and PDZ domain containing 2 | ||
| + | |gene_source=HGNC:28572 | ||
| + | |gene_symbol=FRMPD2 | ||
| + | |gene_synonyms=MGC35285 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:28572 | ||
|nearest_ensembl=ENSG00000170324 | |nearest_ensembl=ENSG00000170324 | ||
|nearest_promoter_id=NM_001018071 | |nearest_promoter_id=NM_001018071 | ||
|nearest_refseq=NM_152428 | |nearest_refseq=NM_152428 | ||
|nearest_unigene=Hs.664786 | |nearest_unigene=Hs.664786 | ||
| + | |num_trans=10 | ||
| + | |species=human | ||
| + | |start=48274822 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000374201.7 uc001jgi.5 CR749241 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_109296.1 | |tss_id=hg_109296.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q68DX3 | ||
}} | }} | ||
Revision as of 00:21, 9 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000374201.7 uc001jgi.5 CR749241 |
|---|---|
| Distance: | -23 |
| Num_trans: | 10 |
| All_trans: | ENST00000374201.7:-23 uc001jgi.5:-23 CR749241:-23 NM_001018071:-51 AK303923:146 ENST00000486151.5:149 uc057tcm.1:149 AK131386:149 BC156408:258 BC157131:258 |
TATA-Box annotation
| Distance to TSS: | 63 |
|---|---|
| Nearest PromoterID: | NM_001018071 |
| Entrez ID: | 143162 |
| Nearest Unigene: | Hs.664786 |
| Nearest Refseq: | NM_152428 |
| Nearest Ensembl: | ENSG00000170324 |
| Gene Name: | FERM and PDZ domain containing 2 |
| Gene Alias: | PDZD5C |
| Gene Description: | FERM and PDZ domain containing 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.587065 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
