Difference between revisions of "TSS:Hg 109504.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.025 |distance_to_tss=257 |entrez_id=288 |gc_percent=0.447761 |gene_alias=ANKYRIN-G|MRT37 |gene_description=ankyrin 3 |gene_name=ANK3 |gene_type=prot...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |MRT37= | ||
| + | |all_trans=ENST00000618374.4:77 uc057tli.1:77 AL136710:77 AK292927:-136 ENST00000486349.2:237 uc057tmd.1:237 ENST00000355288.6:-250 NM_001149:-250 uc001jkw.4:-250 AK092527:-250 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| + | |distance=77 | ||
|distance_to_tss=257 | |distance_to_tss=257 | ||
| + | |end=60140766 | ||
|entrez_id=288 | |entrez_id=288 | ||
|gc_percent=0.447761 | |gc_percent=0.447761 | ||
|gene_alias=ANKYRIN-G|MRT37 | |gene_alias=ANKYRIN-G|MRT37 | ||
|gene_description=ankyrin 3 | |gene_description=ankyrin 3 | ||
| − | |gene_name=ANK3 | + | |gene_id=288 |
| + | |gene_name="ankyrin 3, node of Ranvier (ankyrin G)" | ||
| + | |gene_source=HGNC:494 | ||
| + | |gene_symbol=ANK3 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:494 | ||
|nearest_ensembl=ENSG00000151150 | |nearest_ensembl=ENSG00000151150 | ||
|nearest_promoter_id=NM_001149 | |nearest_promoter_id=NM_001149 | ||
|nearest_refseq=NM_001149 | |nearest_refseq=NM_001149 | ||
|nearest_unigene=Hs.499725 | |nearest_unigene=Hs.499725 | ||
| + | |num_trans=10 | ||
| + | |species=human | ||
| + | |start=60140751 | ||
| + | |strand=- | ||
|tata_box="84(AGCTTTAAAAGG,-,0.00),85(GCTTTAAAAGGA,+,0.00)" | |tata_box="84(AGCTTTAAAAGG,-,0.00),85(GCTTTAAAAGGA,+,0.00)" | ||
| + | |transcript_name=ENST00000618374.4 uc057tli.1 AL136710 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_109504.1 | |tss_id=hg_109504.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A087WUY3 | ||
}} | }} | ||
Revision as of 00:30, 9 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000618374.4 uc057tli.1 AL136710 |
|---|---|
| Distance: | 77 |
| Num_trans: | 10 |
| All_trans: | ENST00000618374.4:77 uc057tli.1:77 AL136710:77 AK292927:-136 ENST00000486349.2:237 uc057tmd.1:237 ENST00000355288.6:-250 NM_001149:-250 uc001jkw.4:-250 AK092527:-250 |
TATA-Box annotation
| Distance to TSS: | 257 |
|---|---|
| Nearest PromoterID: | NM_001149 |
| Entrez ID: | 288 |
| Nearest Unigene: | Hs.499725 |
| Nearest Refseq: | NM_001149 |
| Nearest Ensembl: | ENSG00000151150 |
| Gene Name: | "ankyrin 3, node of Ranvier (ankyrin G)" |
| Gene Alias: | ANKYRIN-G |
| Gene Description: | ankyrin 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.447761 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "84(AGCTTTAAAAGG,-,0.00),85(GCTTTAAAAGGA,+,0.00)" |
