Difference between revisions of "TSS:Hg 109655.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.04 |distance_to_tss=21 |entrez_id=1959 |gc_percent=0.512438 |gene_alias=AT591|CMT1D|CMT4E|KROX20 |gene_description=early growth response 2 |gene_nam...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CMT1D= | ||
| + | |CMT4E= | ||
| + | |KROX20= | ||
| + | |all_trans=ENST00000242480.3:0 ENST00000411732.2:0 NM_001136179:0 NM_001136177:0 NM_000399:0 uc001jmi.4:0 uc010qin.3:0 BC035625:0 CR749641:0 AK091399:31 AF139463:184 J04076:264 KJ901404:317 KR710863:317 KR710864:317 KR710865:317 AB464513:317 KU178040:317 KU178041:317 CU690136:319 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| + | |distance=0 | ||
|distance_to_tss=21 | |distance_to_tss=21 | ||
| + | |end=62816373 | ||
|entrez_id=1959 | |entrez_id=1959 | ||
|gc_percent=0.512438 | |gc_percent=0.512438 | ||
|gene_alias=AT591|CMT1D|CMT4E|KROX20 | |gene_alias=AT591|CMT1D|CMT4E|KROX20 | ||
|gene_description=early growth response 2 | |gene_description=early growth response 2 | ||
| − | |gene_name=EGR2 | + | |gene_id=1959 |
| + | |gene_name=early growth response 2 | ||
| + | |gene_source=HGNC:3239 | ||
| + | |gene_symbol=EGR2 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:3239 | ||
|nearest_ensembl=ENSG00000122877 | |nearest_ensembl=ENSG00000122877 | ||
|nearest_promoter_id=NM_001136179 | |nearest_promoter_id=NM_001136179 | ||
|nearest_refseq=NM_000399 | |nearest_refseq=NM_000399 | ||
|nearest_unigene=Hs.1395 | |nearest_unigene=Hs.1395 | ||
| + | |num_trans=20 | ||
| + | |species=human | ||
| + | |start=62816345 | ||
| + | |strand=- | ||
|tata_box="-80(GTCCATATATGG,-,0.00),-78(CCATATATGGGC,+,0.00),-40(GCCCATAAATAC,-,0.00)" | |tata_box="-80(GTCCATATATGG,-,0.00),-78(CCATATATGGGC,+,0.00),-40(GCCCATAAATAC,-,0.00)" | ||
| + | |transcript_name=ENST00000242480.3 ENST00000411732.2 NM_001136179 NM_001136177 NM_000399 uc001jmi.4 uc010qin.3 BC035625 CR749641 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_109655.1 | |tss_id=hg_109655.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=P11161 | ||
}} | }} | ||
Revision as of 00:36, 9 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000242480.3 ENST00000411732.2 NM_001136179 NM_001136177 NM_000399 uc001jmi.4 uc010qin.3 BC035625 CR749641 |
|---|---|
| Distance: | 0 |
| Num_trans: | 20 |
| All_trans: | ENST00000242480.3:0 ENST00000411732.2:0 NM_001136179:0 NM_001136177:0 NM_000399:0 uc001jmi.4:0 uc010qin.3:0 BC035625:0 CR749641:0 AK091399:31 AF139463:184 J04076:264 KJ901404:317 KR710863:317 KR710864:317 KR710865:317 AB464513:317 KU178040:317 KU178041:317 CU690136:319 |
TATA-Box annotation
| Distance to TSS: | 21 |
|---|---|
| Nearest PromoterID: | NM_001136179 |
| Entrez ID: | 1959 |
| Nearest Unigene: | Hs.1395 |
| Nearest Refseq: | NM_000399 |
| Nearest Ensembl: | ENSG00000122877 |
| Gene Name: | early growth response 2 |
| Gene Alias: | AT591 |
| Gene Description: | early growth response 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.512438 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-80(GTCCATATATGG,-,0.00),-78(CCATATATGGGC,+,0.00),-40(GCCCATAAATAC,-,0.00)" |
