Difference between revisions of "TSS:Hg 112138.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.085 |distance_to_tss=55 |entrez_id=93426 |gc_percent=0.686567 |gene_alias=C10orf94|CT76|POF12|SPGF15 |gene_description=synaptonemal complex central...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |CT76= | ||
| + | |POF12= | ||
| + | |SPGF15= | ||
| + | |all_trans=ENST00000479535.2:0 ENST00000303903.10:0 uc057xaj.1:0 uc009ybn.3:0 AK314978:0 BC034821:0 AK309935:0 ENST00000343131.5:-46 NM_001143763:-46 NM_001143764:-46 uc001lno.2:-46 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
| + | |distance=0 | ||
|distance_to_tss=55 | |distance_to_tss=55 | ||
| + | |end=133565588 | ||
|entrez_id=93426 | |entrez_id=93426 | ||
|gc_percent=0.686567 | |gc_percent=0.686567 | ||
|gene_alias=C10orf94|CT76|POF12|SPGF15 | |gene_alias=C10orf94|CT76|POF12|SPGF15 | ||
|gene_description=synaptonemal complex central element protein 1 | |gene_description=synaptonemal complex central element protein 1 | ||
| − | |gene_name=SYCE1 | + | |gene_id=93426 |
| + | |gene_name=synaptonemal complex central element protein 1 | ||
| + | |gene_source=HGNC:28852 | ||
| + | |gene_symbol=SYCE1 | ||
| + | |gene_synonyms=CT76 bA108K14.6 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:28852 | ||
|nearest_ensembl=ENSG00000171772 | |nearest_ensembl=ENSG00000171772 | ||
|nearest_promoter_id=NM_001143764 | |nearest_promoter_id=NM_001143764 | ||
|nearest_refseq=NM_130784 | |nearest_refseq=NM_130784 | ||
|nearest_unigene=Hs.553795 | |nearest_unigene=Hs.553795 | ||
| + | |num_trans=11 | ||
| + | |species=human | ||
| + | |start=133565570 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000479535.2 ENST00000303903.10 uc057xaj.1 uc009ybn.3 AK314978 BC034821 AK309935 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_112138.1 | |tss_id=hg_112138.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A0B4J1R9 | ||
}} | }} | ||
Revision as of 02:22, 9 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000479535.2 ENST00000303903.10 uc057xaj.1 uc009ybn.3 AK314978 BC034821 AK309935 |
|---|---|
| Distance: | 0 |
| Num_trans: | 11 |
| All_trans: | ENST00000479535.2:0 ENST00000303903.10:0 uc057xaj.1:0 uc009ybn.3:0 AK314978:0 BC034821:0 AK309935:0 ENST00000343131.5:-46 NM_001143763:-46 NM_001143764:-46 uc001lno.2:-46 |
TATA-Box annotation
| Distance to TSS: | 55 |
|---|---|
| Nearest PromoterID: | NM_001143764 |
| Entrez ID: | 93426 |
| Nearest Unigene: | Hs.553795 |
| Nearest Refseq: | NM_130784 |
| Nearest Ensembl: | ENSG00000171772 |
| Gene Name: | synaptonemal complex central element protein 1 |
| Gene Alias: | C10orf94 |
| Gene Description: | synaptonemal complex central element protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.686567 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
