Difference between revisions of "TSS:Hg 112140.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.085 |distance_to_tss=24 |entrez_id=93426 |gc_percent=0.671642 |gene_alias=C10orf94|CT76|POF12|SPGF15 |gene_description=synaptonemal complex central...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CT76= | ||
| + | |POF12= | ||
| + | |SPGF15= | ||
| + | |all_trans=ENST00000343131.5:-19 NM_001143763:-19 NM_001143764:-19 uc001lno.2:-19 BC034821:21 ENST00000479535.2:22 ENST00000303903.10:22 uc057xaj.1:22 uc009ybn.3:22 AK314978:22 AK309935:26 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
| + | |distance=-19 | ||
|distance_to_tss=24 | |distance_to_tss=24 | ||
| + | |end=133565615 | ||
|entrez_id=93426 | |entrez_id=93426 | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
|gene_alias=C10orf94|CT76|POF12|SPGF15 | |gene_alias=C10orf94|CT76|POF12|SPGF15 | ||
|gene_description=synaptonemal complex central element protein 1 | |gene_description=synaptonemal complex central element protein 1 | ||
| − | |gene_name=SYCE1 | + | |gene_id=93426 |
| + | |gene_name=synaptonemal complex central element protein 1 | ||
| + | |gene_source=HGNC:28852 | ||
| + | |gene_symbol=SYCE1 | ||
| + | |gene_synonyms=CT76 bA108K14.6 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:28852 | ||
|nearest_ensembl=ENSG00000171772 | |nearest_ensembl=ENSG00000171772 | ||
|nearest_promoter_id=NM_001143764 | |nearest_promoter_id=NM_001143764 | ||
|nearest_refseq=NM_130784 | |nearest_refseq=NM_130784 | ||
|nearest_unigene=Hs.553795 | |nearest_unigene=Hs.553795 | ||
| + | |num_trans=11 | ||
| + | |species=human | ||
| + | |start=133565604 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000343131.5 NM_001143763 NM_001143764 uc001lno.2 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_112140.1 | |tss_id=hg_112140.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q8N0S2 | ||
}} | }} | ||
Revision as of 02:22, 9 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000343131.5 NM_001143763 NM_001143764 uc001lno.2 |
|---|---|
| Distance: | -19 |
| Num_trans: | 11 |
| All_trans: | ENST00000343131.5:-19 NM_001143763:-19 NM_001143764:-19 uc001lno.2:-19 BC034821:21 ENST00000479535.2:22 ENST00000303903.10:22 uc057xaj.1:22 uc009ybn.3:22 AK314978:22 AK309935:26 |
TATA-Box annotation
| Distance to TSS: | 24 |
|---|---|
| Nearest PromoterID: | NM_001143764 |
| Entrez ID: | 93426 |
| Nearest Unigene: | Hs.553795 |
| Nearest Refseq: | NM_130784 |
| Nearest Ensembl: | ENSG00000171772 |
| Gene Name: | synaptonemal complex central element protein 1 |
| Gene Alias: | C10orf94 |
| Gene Description: | synaptonemal complex central element protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
