Difference between revisions of "TSS:Hg 112265.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.09 |distance_to_tss=-162 |entrez_id=6181 |gc_percent=0.641791 |gene_alias=D11S2243E|LP2|P2|RPP2 |gene_description=ribosomal protein lateral stalk su...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |LP2= | ||
| + | |P2= | ||
| + | |RPP2= | ||
| + | |all_trans=ENST00000321153.8:-125 uc001lrq.2:-125 NM_001004:160 ENST00000532004.5:189 uc057xnm.1:189 BC005354:189 D28411:191 BC005920:191 AK311954:192 AK130959:192 M17887:192 ENST00000530797.5:208 uc057xnn.1:208 BC062314:211 BC007573:215 AK056066:221 ENST00000524867.1:227 uc057xno.1:227 KJ892048:458 CR542248:459 CR542212:459 ENST00000530398.1:493 uc057xnp.1:493 | ||
| + | |chr=chr11 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
| + | |distance=-125 | ||
|distance_to_tss=-162 | |distance_to_tss=-162 | ||
| + | |end=809776 | ||
|entrez_id=6181 | |entrez_id=6181 | ||
|gc_percent=0.641791 | |gc_percent=0.641791 | ||
|gene_alias=D11S2243E|LP2|P2|RPP2 | |gene_alias=D11S2243E|LP2|P2|RPP2 | ||
|gene_description=ribosomal protein lateral stalk subunit P2 | |gene_description=ribosomal protein lateral stalk subunit P2 | ||
| − | |gene_name=RPLP2 | + | |gene_id=6181 |
| + | |gene_name=ribosomal protein lateral stalk subunit P2 | ||
| + | |gene_source=HGNC:10377 | ||
| + | |gene_symbol=RPLP2 | ||
| + | |gene_synonyms=LP2 MGC71408 P2 RPP2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:10377 | ||
|nearest_ensembl=ENSG00000177600 | |nearest_ensembl=ENSG00000177600 | ||
|nearest_promoter_id=NM_001004 | |nearest_promoter_id=NM_001004 | ||
|nearest_refseq=NM_001004 | |nearest_refseq=NM_001004 | ||
|nearest_unigene=Hs.437594 | |nearest_unigene=Hs.437594 | ||
| + | |num_trans=23 | ||
| + | |species=human | ||
| + | |start=809771 | ||
| + | |strand=+ | ||
|tata_box="-32(CGCTATAAGAGC,-,0.00)" | |tata_box="-32(CGCTATAAGAGC,-,0.00)" | ||
| + | |transcript_name=ENST00000321153.8 uc001lrq.2 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_112265.1 | |tss_id=hg_112265.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A024RCA7 P05387 | ||
}} | }} | ||
Revision as of 02:28, 9 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000321153.8 uc001lrq.2 |
|---|---|
| Distance: | -125 |
| Num_trans: | 23 |
| All_trans: | ENST00000321153.8:-125 uc001lrq.2:-125 NM_001004:160 ENST00000532004.5:189 uc057xnm.1:189 BC005354:189 D28411:191 BC005920:191 AK311954:192 AK130959:192 M17887:192 ENST00000530797.5:208 uc057xnn.1:208 BC062314:211 BC007573:215 AK056066:221 ENST00000524867.1:227 uc057xno.1:227 KJ892048:458 CR542248:459 CR542212:459 ENST00000530398.1:493 uc057xnp.1:493 |
TATA-Box annotation
| Distance to TSS: | -162 |
|---|---|
| Nearest PromoterID: | NM_001004 |
| Entrez ID: | 6181 |
| Nearest Unigene: | Hs.437594 |
| Nearest Refseq: | NM_001004 |
| Nearest Ensembl: | ENSG00000177600 |
| Gene Name: | ribosomal protein lateral stalk subunit P2 |
| Gene Alias: | D11S2243E |
| Gene Description: | ribosomal protein lateral stalk subunit P2 |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-32(CGCTATAAGAGC,-,0.00)" |
