Difference between revisions of "TSS:Hg 112293.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=-2102 |entrez_id=283229 |gc_percent=0.636816 |gene_alias=EFCAB4A |gene_description=calcium release activated channel regulator 2...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000528315.1:0 ENST00000533803.1:0 ENST00000534191.1:0 uc057xob.1:0 uc057xoc.1:0 uc010qwt.4:0 AK304093:0 | ||
| + | |chr=chr11 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| + | |distance=0 | ||
|distance_to_tss=-2102 | |distance_to_tss=-2102 | ||
| + | |end=826180 | ||
|entrez_id=283229 | |entrez_id=283229 | ||
|gc_percent=0.636816 | |gc_percent=0.636816 | ||
|gene_alias=EFCAB4A | |gene_alias=EFCAB4A | ||
|gene_description=calcium release activated channel regulator 2B | |gene_description=calcium release activated channel regulator 2B | ||
| − | |gene_name=CRACR2B | + | |gene_id=283229 |
| + | |gene_name=calcium release activated channel regulator 2B | ||
| + | |gene_source=HGNC:28703 | ||
| + | |gene_symbol=CRACR2B | ||
| + | |gene_synonyms=MGC45840 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:28703 | ||
|nearest_ensembl=ENSG00000177685 | |nearest_ensembl=ENSG00000177685 | ||
|nearest_promoter_id=NM_173584 | |nearest_promoter_id=NM_173584 | ||
|nearest_refseq=NM_173584 | |nearest_refseq=NM_173584 | ||
|nearest_unigene=Hs.660936 | |nearest_unigene=Hs.660936 | ||
| + | |num_trans=7 | ||
| + | |species=human | ||
| + | |start=826136 | ||
| + | |strand=+ | ||
|tata_box="42(TCCTTGAAAAGC,-,0.00)" | |tata_box="42(TCCTTGAAAAGC,-,0.00)" | ||
| + | |transcript_name=ENST00000528315.1 ENST00000533803.1 ENST00000534191.1 uc057xob.1 uc057xoc.1 uc010qwt.4 AK304093 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_112293.1 | |tss_id=hg_112293.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B4E237 E9PK04 E9PRE5 | ||
}} | }} | ||
Revision as of 02:29, 9 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000528315.1 ENST00000533803.1 ENST00000534191.1 uc057xob.1 uc057xoc.1 uc010qwt.4 AK304093 |
|---|---|
| Distance: | 0 |
| Num_trans: | 7 |
| All_trans: | ENST00000528315.1:0 ENST00000533803.1:0 ENST00000534191.1:0 uc057xob.1:0 uc057xoc.1:0 uc010qwt.4:0 AK304093:0 |
TATA-Box annotation
| Distance to TSS: | -2102 |
|---|---|
| Nearest PromoterID: | NM_173584 |
| Entrez ID: | 283229 |
| Nearest Unigene: | Hs.660936 |
| Nearest Refseq: | NM_173584 |
| Nearest Ensembl: | ENSG00000177685 |
| Gene Name: | calcium release activated channel regulator 2B |
| Gene Alias: | EFCAB4A |
| Gene Description: | calcium release activated channel regulator 2B |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "42(TCCTTGAAAAGC,-,0.00)" |
