Difference between revisions of "TSS:Hg 114450.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=-3 |entrez_id=51338 |gc_percent=0.412935 |gene_alias=4SPAN1|CD20-L1|CD20L1|HDCME31P|MS4A4|MS4A7 |gene_description=membrane spann...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |CD20-L1= | ||
| + | |CD20L1= | ||
| + | |HDCME31P= | ||
| + | |MS4A4= | ||
| + | |MS4A7= | ||
| + | |all_trans=ENST00000532114.5:0 NM_148975:0 NM_001243266:0 NM_024021:0 uc001npc.4:0 ENST00000337908.4:42 uc001noz.4:42 AK292089:42 ENST00000343968.8:112 uc058bto.1:112 AK075081:112 BC020648:122 ENST00000527056.5:125 uc058btp.1:125 CU676600:130 KJ893892:130 DQ891395:131 DQ894573:131 AB022821:132 ENST00000529950.1:141 uc058btq.1:141 AK314033:154 AB013102:157 | ||
| + | |chr=chr11 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| + | |distance=0 | ||
|distance_to_tss=-3 | |distance_to_tss=-3 | ||
| + | |end=60280544 | ||
|entrez_id=51338 | |entrez_id=51338 | ||
|gc_percent=0.412935 | |gc_percent=0.412935 | ||
|gene_alias=4SPAN1|CD20-L1|CD20L1|HDCME31P|MS4A4|MS4A7 | |gene_alias=4SPAN1|CD20-L1|CD20L1|HDCME31P|MS4A4|MS4A7 | ||
|gene_description=membrane spanning 4-domains A4A | |gene_description=membrane spanning 4-domains A4A | ||
| − | |gene_name=MS4A4A | + | |gene_id=51338 |
| + | |gene_name=membrane spanning 4-domains A4A | ||
| + | |gene_source=HGNC:13371 | ||
| + | |gene_symbol=MS4A4A | ||
| + | |gene_synonyms=CD20L1 MS4A7 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:13371 | ||
|nearest_ensembl=ENSG00000110079 | |nearest_ensembl=ENSG00000110079 | ||
|nearest_promoter_id=NM_148975 | |nearest_promoter_id=NM_148975 | ||
|nearest_refseq=NM_024021 | |nearest_refseq=NM_024021 | ||
|nearest_unigene=Hs.325960 | |nearest_unigene=Hs.325960 | ||
| + | |num_trans=23 | ||
| + | |species=human | ||
| + | |start=60280531 | ||
| + | |strand=+ | ||
|tata_box="-32(CGATATAAAAGA,-,0.00)" | |tata_box="-32(CGATATAAAAGA,-,0.00)" | ||
| + | |transcript_name=ENST00000532114.5 NM_148975 NM_001243266 NM_024021 uc001npc.4 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_114450.1 | |tss_id=hg_114450.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q96JQ5 | ||
}} | }} | ||
Revision as of 04:00, 9 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000532114.5 NM_148975 NM_001243266 NM_024021 uc001npc.4 |
|---|---|
| Distance: | 0 |
| Num_trans: | 23 |
| All_trans: | ENST00000532114.5:0 NM_148975:0 NM_001243266:0 NM_024021:0 uc001npc.4:0 ENST00000337908.4:42 uc001noz.4:42 AK292089:42 ENST00000343968.8:112 uc058bto.1:112 AK075081:112 BC020648:122 ENST00000527056.5:125 uc058btp.1:125 CU676600:130 KJ893892:130 DQ891395:131 DQ894573:131 AB022821:132 ENST00000529950.1:141 uc058btq.1:141 AK314033:154 AB013102:157 |
TATA-Box annotation
| Distance to TSS: | -3 |
|---|---|
| Nearest PromoterID: | NM_148975 |
| Entrez ID: | 51338 |
| Nearest Unigene: | Hs.325960 |
| Nearest Refseq: | NM_024021 |
| Nearest Ensembl: | ENSG00000110079 |
| Gene Name: | membrane spanning 4-domains A4A |
| Gene Alias: | 4SPAN1 |
| Gene Description: | membrane spanning 4-domains A4A |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.412935 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-32(CGATATAAAAGA,-,0.00)" |
