Difference between revisions of "TSS:Hg 114452.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=44 |entrez_id=51338 |gc_percent=0.447761 |gene_alias=4SPAN1|CD20-L1|CD20L1|HDCME31P|MS4A4|MS4A7 |gene_description=membrane spann...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CD20-L1= | ||
| + | |CD20L1= | ||
| + | |HDCME31P= | ||
| + | |MS4A4= | ||
| + | |MS4A7= | ||
| + | |all_trans=ENST00000337908.4:0 uc001noz.4:0 AK292089:0 ENST00000532114.5:-40 NM_148975:-40 NM_001243266:-40 NM_024021:-40 uc001npc.4:-40 ENST00000343968.8:66 uc058bto.1:66 AK075081:66 BC020648:76 ENST00000527056.5:79 uc058btp.1:79 CU676600:84 KJ893892:84 DQ891395:85 DQ894573:85 AB022821:86 ENST00000529950.1:95 uc058btq.1:95 AK314033:108 AB013102:111 | ||
| + | |chr=chr11 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| + | |distance=0 | ||
|distance_to_tss=44 | |distance_to_tss=44 | ||
| + | |end=60280590 | ||
|entrez_id=51338 | |entrez_id=51338 | ||
|gc_percent=0.447761 | |gc_percent=0.447761 | ||
|gene_alias=4SPAN1|CD20-L1|CD20L1|HDCME31P|MS4A4|MS4A7 | |gene_alias=4SPAN1|CD20-L1|CD20L1|HDCME31P|MS4A4|MS4A7 | ||
|gene_description=membrane spanning 4-domains A4A | |gene_description=membrane spanning 4-domains A4A | ||
| − | |gene_name=MS4A4A | + | |gene_id=51338 |
| + | |gene_name=membrane spanning 4-domains A4A | ||
| + | |gene_source=HGNC:13371 | ||
| + | |gene_symbol=MS4A4A | ||
| + | |gene_synonyms=CD20L1 MS4A7 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:13371 | ||
|nearest_ensembl=ENSG00000110079 | |nearest_ensembl=ENSG00000110079 | ||
|nearest_promoter_id=NM_001243266 | |nearest_promoter_id=NM_001243266 | ||
|nearest_refseq=NM_024021 | |nearest_refseq=NM_024021 | ||
|nearest_unigene=Hs.325960 | |nearest_unigene=Hs.325960 | ||
| + | |num_trans=23 | ||
| + | |species=human | ||
| + | |start=60280580 | ||
| + | |strand=+ | ||
|tata_box="-79(CGATATAAAAGA,-,0.00)" | |tata_box="-79(CGATATAAAAGA,-,0.00)" | ||
| + | |transcript_name=ENST00000337908.4 uc001noz.4 AK292089 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_114452.1 | |tss_id=hg_114452.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A8K7S4 Q96JQ5 | ||
}} | }} | ||
Revision as of 04:01, 9 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000337908.4 uc001noz.4 AK292089 |
|---|---|
| Distance: | 0 |
| Num_trans: | 23 |
| All_trans: | ENST00000337908.4:0 uc001noz.4:0 AK292089:0 ENST00000532114.5:-40 NM_148975:-40 NM_001243266:-40 NM_024021:-40 uc001npc.4:-40 ENST00000343968.8:66 uc058bto.1:66 AK075081:66 BC020648:76 ENST00000527056.5:79 uc058btp.1:79 CU676600:84 KJ893892:84 DQ891395:85 DQ894573:85 AB022821:86 ENST00000529950.1:95 uc058btq.1:95 AK314033:108 AB013102:111 |
TATA-Box annotation
| Distance to TSS: | 44 |
|---|---|
| Nearest PromoterID: | NM_001243266 |
| Entrez ID: | 51338 |
| Nearest Unigene: | Hs.325960 |
| Nearest Refseq: | NM_024021 |
| Nearest Ensembl: | ENSG00000110079 |
| Gene Name: | membrane spanning 4-domains A4A |
| Gene Alias: | 4SPAN1 |
| Gene Description: | membrane spanning 4-domains A4A |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.447761 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-79(CGATATAAAAGA,-,0.00)" |
