Difference between revisions of "TSS:Hg 118109.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=-343 |entrez_id=100033819 |gc_percent=0.656716 |gene_alias=MIRN675|hsa-mir-675 |gene_description=microRNA 675 |gene_name=MIR675...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=BC023213:-9 BC053637:11 BC007513:25 ENST00000411861.5:-39 uc021qbz.2:-39 BC063626:-39 BC098439:-57 BC063564:-59 BC006831:65 BC069247:-85 ENST00000417089.5:145 uc057xvu.1:145 BC015952:-179 ENST00000439725.5:-282 uc021qca.2:-282 BC053636:-296 BC110657:-296 BC115700:-325 LG052084:339 AB372813:383 BC013067:465 BC002550:-478 | ||
| + | |chr=chr11 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| + | |distance=-9 | ||
|distance_to_tss=-343 | |distance_to_tss=-343 | ||
| + | |end=1997178 | ||
|entrez_id=100033819 | |entrez_id=100033819 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
|gene_alias=MIRN675|hsa-mir-675 | |gene_alias=MIRN675|hsa-mir-675 | ||
|gene_description=microRNA 675 | |gene_description=microRNA 675 | ||
| − | |gene_name= | + | |gene_id=283120 |
| + | |gene_name="H19, imprinted maternally expressed transcript (non-protein coding)" | ||
| + | |gene_source=HGNC:4713 | ||
| + | |gene_symbol=H19 | ||
| + | |gene_synonyms=ASM ASM1 D11S813E LINC00008 NCRNA00008 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:4713 | ||
| + | |hsa-mir-675= | ||
|nearest_ensembl=ENSG00000130600 | |nearest_ensembl=ENSG00000130600 | ||
|nearest_promoter_id=NR_030533 | |nearest_promoter_id=NR_030533 | ||
|nearest_refseq=NR_030533 | |nearest_refseq=NR_030533 | ||
|nearest_unigene= | |nearest_unigene= | ||
| + | |num_trans=22 | ||
| + | |species=human | ||
| + | |start=1997169 | ||
| + | |strand=- | ||
| + | |transcript_name=BC023213 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_118109.1 | |tss_id=hg_118109.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 06:36, 9 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | BC023213 |
|---|---|
| Distance: | -9 |
| Num_trans: | 22 |
| All_trans: | BC023213:-9 BC053637:11 BC007513:25 ENST00000411861.5:-39 uc021qbz.2:-39 BC063626:-39 BC098439:-57 BC063564:-59 BC006831:65 BC069247:-85 ENST00000417089.5:145 uc057xvu.1:145 BC015952:-179 ENST00000439725.5:-282 uc021qca.2:-282 BC053636:-296 BC110657:-296 BC115700:-325 LG052084:339 AB372813:383 BC013067:465 BC002550:-478 |
TATA-Box annotation
| Distance to TSS: | -343 |
|---|---|
| Nearest PromoterID: | NR_030533 |
| Entrez ID: | 100033819 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_030533 |
| Nearest Ensembl: | ENSG00000130600 |
| Gene Name: | "H19, imprinted maternally expressed transcript (non-protein coding)" |
| Gene Alias: | MIRN675 |
| Gene Description: | microRNA 675 |
| Gene Type: | ncRNA |
| CpG%: | 0.03 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
