Difference between revisions of "TSS:Hg 118112.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.035 |distance_to_tss=-489 |entrez_id=100033819 |gc_percent=0.651741 |gene_alias=MIRN675|hsa-mir-675 |gene_description=microRNA 675 |gene_name=MIR675...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=BC015952:-32 BC069247:52 BC063564:78 BC098439:80 ENST00000411861.5:98 uc021qbz.2:98 BC063626:98 BC023213:128 ENST00000439725.5:-135 uc021qca.2:-135 BC053636:-149 BC110657:-149 BC053637:156 BC007513:170 BC115700:-178 BC006831:210 ENST00000417089.5:290 uc057xvu.1:290 BC002550:-331 BC040852:-436 BC040073:-453 ENST00000422826.1:-472 ENST00000411754.5:-472 uc057xvs.1:-472 uc057xvv.1:-472 LG052084:484 ENST00000412788.5:-489 uc001lva.5:-489 ENST00000431095.5:-490 uc057xvw.1:-490 | ||
| + | |chr=chr11 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| + | |distance=-32 | ||
|distance_to_tss=-489 | |distance_to_tss=-489 | ||
| + | |end=1997325 | ||
|entrez_id=100033819 | |entrez_id=100033819 | ||
|gc_percent=0.651741 | |gc_percent=0.651741 | ||
|gene_alias=MIRN675|hsa-mir-675 | |gene_alias=MIRN675|hsa-mir-675 | ||
|gene_description=microRNA 675 | |gene_description=microRNA 675 | ||
| − | |gene_name= | + | |gene_id=283120 |
| + | |gene_name="H19, imprinted maternally expressed transcript (non-protein coding)" | ||
| + | |gene_source=HGNC:4713 | ||
| + | |gene_symbol=H19 | ||
| + | |gene_synonyms=ASM ASM1 D11S813E LINC00008 NCRNA00008 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:4713 | ||
| + | |hsa-mir-675= | ||
|nearest_ensembl=ENSG00000130600 | |nearest_ensembl=ENSG00000130600 | ||
|nearest_promoter_id=NR_030533 | |nearest_promoter_id=NR_030533 | ||
|nearest_refseq=NR_030533 | |nearest_refseq=NR_030533 | ||
|nearest_unigene= | |nearest_unigene= | ||
| + | |num_trans=30 | ||
| + | |species=human | ||
| + | |start=1997314 | ||
| + | |strand=- | ||
| + | |transcript_name=BC015952 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_118112.1 | |tss_id=hg_118112.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 06:37, 9 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC015952 |
|---|---|
| Distance: | -32 |
| Num_trans: | 30 |
| All_trans: | BC015952:-32 BC069247:52 BC063564:78 BC098439:80 ENST00000411861.5:98 uc021qbz.2:98 BC063626:98 BC023213:128 ENST00000439725.5:-135 uc021qca.2:-135 BC053636:-149 BC110657:-149 BC053637:156 BC007513:170 BC115700:-178 BC006831:210 ENST00000417089.5:290 uc057xvu.1:290 BC002550:-331 BC040852:-436 BC040073:-453 ENST00000422826.1:-472 ENST00000411754.5:-472 uc057xvs.1:-472 uc057xvv.1:-472 LG052084:484 ENST00000412788.5:-489 uc001lva.5:-489 ENST00000431095.5:-490 uc057xvw.1:-490 |
TATA-Box annotation
| Distance to TSS: | -489 |
|---|---|
| Nearest PromoterID: | NR_030533 |
| Entrez ID: | 100033819 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_030533 |
| Nearest Ensembl: | ENSG00000130600 |
| Gene Name: | "H19, imprinted maternally expressed transcript (non-protein coding)" |
| Gene Alias: | MIRN675 |
| Gene Description: | microRNA 675 |
| Gene Type: | ncRNA |
| CpG%: | 0.035 |
| GC%: | 0.651741 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
