Difference between revisions of "TSS:Hg 118113.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.035 |distance_to_tss=406 |entrez_id=283120 |gc_percent=0.646766 |gene_alias=ASM|ASM1|BWS|D11S813E|LINC00008|NCRNA00008|WT2 |gene_description="H19, i...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |ASM1= | ||
| + | |BWS= | ||
| + | |D11S813E= | ||
| + | |LINC00008= | ||
| + | |NCRNA00008= | ||
| + | |WT2= | ||
| + | |all_trans=BC053636:-5 BC110657:-5 ENST00000439725.5:9 uc021qca.2:9 BC115700:-34 BC015952:112 BC002550:-187 BC069247:206 BC063564:232 BC098439:234 ENST00000411861.5:252 uc021qbz.2:252 BC063626:252 BC023213:282 BC040852:-292 BC040073:-309 BC053637:310 BC007513:324 ENST00000422826.1:-328 ENST00000411754.5:-328 uc057xvs.1:-328 uc057xvv.1:-328 ENST00000412788.5:-345 uc001lva.5:-345 ENST00000431095.5:-346 uc057xvw.1:-346 ENST00000446406.5:-358 uc057xvt.1:-358 BC006831:364 AK056774:-373 AK092486:-373 AK311497:-373 AK309887:-373 ENST00000414790.5:-406 NR_131223:-406 NR_002196:-406 uc021qby.2:-406 ENST00000417089.5:444 uc057xvu.1:444 | ||
| + | |chr=chr11 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| + | |distance=-5 | ||
|distance_to_tss=406 | |distance_to_tss=406 | ||
| + | |end=1997469 | ||
|entrez_id=283120 | |entrez_id=283120 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
|gene_alias=ASM|ASM1|BWS|D11S813E|LINC00008|NCRNA00008|WT2 | |gene_alias=ASM|ASM1|BWS|D11S813E|LINC00008|NCRNA00008|WT2 | ||
|gene_description="H19, imprinted maternally expressed transcript (non-protein coding)" | |gene_description="H19, imprinted maternally expressed transcript (non-protein coding)" | ||
| − | |gene_name=H19 | + | |gene_id=283120 |
| + | |gene_name="H19, imprinted maternally expressed transcript (non-protein coding)" | ||
| + | |gene_source=HGNC:4713 | ||
| + | |gene_symbol=H19 | ||
| + | |gene_synonyms=ASM ASM1 D11S813E LINC00008 NCRNA00008 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:4713 | ||
|nearest_ensembl=ENSG00000130600 | |nearest_ensembl=ENSG00000130600 | ||
|nearest_promoter_id=NR_002196 | |nearest_promoter_id=NR_002196 | ||
|nearest_refseq=NR_002196 | |nearest_refseq=NR_002196 | ||
|nearest_unigene=Hs.533566 | |nearest_unigene=Hs.533566 | ||
| + | |num_trans=39 | ||
| + | |species=human | ||
| + | |start=1997468 | ||
| + | |strand=- | ||
| + | |transcript_name=BC053636 BC110657 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_118113.1 | |tss_id=hg_118113.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 06:37, 9 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | BC053636 BC110657 |
|---|---|
| Distance: | -5 |
| Num_trans: | 39 |
| All_trans: | BC053636:-5 BC110657:-5 ENST00000439725.5:9 uc021qca.2:9 BC115700:-34 BC015952:112 BC002550:-187 BC069247:206 BC063564:232 BC098439:234 ENST00000411861.5:252 uc021qbz.2:252 BC063626:252 BC023213:282 BC040852:-292 BC040073:-309 BC053637:310 BC007513:324 ENST00000422826.1:-328 ENST00000411754.5:-328 uc057xvs.1:-328 uc057xvv.1:-328 ENST00000412788.5:-345 uc001lva.5:-345 ENST00000431095.5:-346 uc057xvw.1:-346 ENST00000446406.5:-358 uc057xvt.1:-358 BC006831:364 AK056774:-373 AK092486:-373 AK311497:-373 AK309887:-373 ENST00000414790.5:-406 NR_131223:-406 NR_002196:-406 uc021qby.2:-406 ENST00000417089.5:444 uc057xvu.1:444 |
TATA-Box annotation
| Distance to TSS: | 406 |
|---|---|
| Nearest PromoterID: | NR_002196 |
| Entrez ID: | 283120 |
| Nearest Unigene: | Hs.533566 |
| Nearest Refseq: | NR_002196 |
| Nearest Ensembl: | ENSG00000130600 |
| Gene Name: | "H19, imprinted maternally expressed transcript (non-protein coding)" |
| Gene Alias: | ASM |
| Gene Description: | "H19, imprinted maternally expressed transcript (non-protein coding)" |
| Gene Type: | ncRNA |
| CpG%: | 0.035 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
