Difference between revisions of "TSS:Hg 118114.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.04 |distance_to_tss=326 |entrez_id=283120 |gc_percent=0.636816 |gene_alias=ASM|ASM1|BWS|D11S813E|LINC00008|NCRNA00008|WT2 |gene_description="H19, im...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |ASM1= | ||
| + | |BWS= | ||
| + | |D11S813E= | ||
| + | |LINC00008= | ||
| + | |NCRNA00008= | ||
| + | |WT2= | ||
| + | |all_trans=BC115700:41 BC053636:70 BC110657:70 ENST00000439725.5:84 uc021qca.2:84 BC002550:-101 BC015952:187 BC040852:-206 BC040073:-223 ENST00000422826.1:-242 ENST00000411754.5:-242 uc057xvs.1:-242 uc057xvv.1:-242 ENST00000412788.5:-259 uc001lva.5:-259 ENST00000431095.5:-260 uc057xvw.1:-260 ENST00000446406.5:-272 uc057xvt.1:-272 BC069247:281 AK056774:-287 AK092486:-287 AK311497:-287 AK309887:-287 BC063564:307 BC098439:309 ENST00000414790.5:-320 NR_131223:-320 NR_002196:-320 uc021qby.2:-320 ENST00000411861.5:327 uc021qbz.2:327 BC063626:327 BC023213:357 BC053637:385 BC007513:399 BC006831:439 | ||
| + | |chr=chr11 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| + | |distance=41 | ||
|distance_to_tss=326 | |distance_to_tss=326 | ||
| + | |end=1997555 | ||
|entrez_id=283120 | |entrez_id=283120 | ||
|gc_percent=0.636816 | |gc_percent=0.636816 | ||
|gene_alias=ASM|ASM1|BWS|D11S813E|LINC00008|NCRNA00008|WT2 | |gene_alias=ASM|ASM1|BWS|D11S813E|LINC00008|NCRNA00008|WT2 | ||
|gene_description="H19, imprinted maternally expressed transcript (non-protein coding)" | |gene_description="H19, imprinted maternally expressed transcript (non-protein coding)" | ||
| − | |gene_name=H19 | + | |gene_id=283120 |
| + | |gene_name="H19, imprinted maternally expressed transcript (non-protein coding)" | ||
| + | |gene_source=HGNC:4713 | ||
| + | |gene_symbol=H19 | ||
| + | |gene_synonyms=ASM ASM1 D11S813E LINC00008 NCRNA00008 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:4713 | ||
|nearest_ensembl=ENSG00000130600 | |nearest_ensembl=ENSG00000130600 | ||
|nearest_promoter_id=NR_002196 | |nearest_promoter_id=NR_002196 | ||
|nearest_refseq=NR_002196 | |nearest_refseq=NR_002196 | ||
|nearest_unigene=Hs.533566 | |nearest_unigene=Hs.533566 | ||
| + | |num_trans=37 | ||
| + | |species=human | ||
| + | |start=1997543 | ||
| + | |strand=- | ||
| + | |transcript_name=BC115700 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_118114.1 | |tss_id=hg_118114.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 06:37, 9 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | BC115700 |
|---|---|
| Distance: | 41 |
| Num_trans: | 37 |
| All_trans: | BC115700:41 BC053636:70 BC110657:70 ENST00000439725.5:84 uc021qca.2:84 BC002550:-101 BC015952:187 BC040852:-206 BC040073:-223 ENST00000422826.1:-242 ENST00000411754.5:-242 uc057xvs.1:-242 uc057xvv.1:-242 ENST00000412788.5:-259 uc001lva.5:-259 ENST00000431095.5:-260 uc057xvw.1:-260 ENST00000446406.5:-272 uc057xvt.1:-272 BC069247:281 AK056774:-287 AK092486:-287 AK311497:-287 AK309887:-287 BC063564:307 BC098439:309 ENST00000414790.5:-320 NR_131223:-320 NR_002196:-320 uc021qby.2:-320 ENST00000411861.5:327 uc021qbz.2:327 BC063626:327 BC023213:357 BC053637:385 BC007513:399 BC006831:439 |
TATA-Box annotation
| Distance to TSS: | 326 |
|---|---|
| Nearest PromoterID: | NR_002196 |
| Entrez ID: | 283120 |
| Nearest Unigene: | Hs.533566 |
| Nearest Refseq: | NR_002196 |
| Nearest Ensembl: | ENSG00000130600 |
| Gene Name: | "H19, imprinted maternally expressed transcript (non-protein coding)" |
| Gene Alias: | ASM |
| Gene Description: | "H19, imprinted maternally expressed transcript (non-protein coding)" |
| Gene Type: | ncRNA |
| CpG%: | 0.04 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
