Difference between revisions of "TSS:Hg 118117.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.02 |distance_to_tss=142 |entrez_id=283120 |gc_percent=0.656716 |gene_alias=ASM|ASM1|BWS|D11S813E|LINC00008|NCRNA00008|WT2 |gene_description="H19, im...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |ASM1= | ||
| + | |BWS= | ||
| + | |D11S813E= | ||
| + | |LINC00008= | ||
| + | |NCRNA00008= | ||
| + | |WT2= | ||
| + | |all_trans=BC040852:-22 BC040073:-39 ENST00000422826.1:-58 ENST00000411754.5:-58 uc057xvs.1:-58 uc057xvv.1:-58 BC002550:71 ENST00000412788.5:-75 uc001lva.5:-75 ENST00000431095.5:-76 uc057xvw.1:-76 ENST00000446406.5:-88 uc057xvt.1:-88 AK056774:-103 AK092486:-103 AK311497:-103 AK309887:-103 ENST00000414790.5:-136 NR_131223:-136 NR_002196:-136 uc021qby.2:-136 BC115700:224 BC053636:253 BC110657:253 ENST00000439725.5:267 uc021qca.2:267 BC015952:370 BC069247:464 BC063564:490 BC098439:492 | ||
| + | |chr=chr11 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| + | |distance=-22 | ||
|distance_to_tss=142 | |distance_to_tss=142 | ||
| + | |end=1997739 | ||
|entrez_id=283120 | |entrez_id=283120 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
|gene_alias=ASM|ASM1|BWS|D11S813E|LINC00008|NCRNA00008|WT2 | |gene_alias=ASM|ASM1|BWS|D11S813E|LINC00008|NCRNA00008|WT2 | ||
|gene_description="H19, imprinted maternally expressed transcript (non-protein coding)" | |gene_description="H19, imprinted maternally expressed transcript (non-protein coding)" | ||
| − | |gene_name=H19 | + | |gene_id=283120 |
| + | |gene_name="H19, imprinted maternally expressed transcript (non-protein coding)" | ||
| + | |gene_source=HGNC:4713 | ||
| + | |gene_symbol=H19 | ||
| + | |gene_synonyms=ASM ASM1 D11S813E LINC00008 NCRNA00008 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:4713 | ||
|nearest_ensembl=ENSG00000130600 | |nearest_ensembl=ENSG00000130600 | ||
|nearest_promoter_id=NR_002196 | |nearest_promoter_id=NR_002196 | ||
|nearest_refseq=NR_002196 | |nearest_refseq=NR_002196 | ||
|nearest_unigene=Hs.533566 | |nearest_unigene=Hs.533566 | ||
| + | |num_trans=30 | ||
| + | |species=human | ||
| + | |start=1997726 | ||
| + | |strand=- | ||
| + | |transcript_name=BC040852 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_118117.1 | |tss_id=hg_118117.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 06:37, 9 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC040852 |
|---|---|
| Distance: | -22 |
| Num_trans: | 30 |
| All_trans: | BC040852:-22 BC040073:-39 ENST00000422826.1:-58 ENST00000411754.5:-58 uc057xvs.1:-58 uc057xvv.1:-58 BC002550:71 ENST00000412788.5:-75 uc001lva.5:-75 ENST00000431095.5:-76 uc057xvw.1:-76 ENST00000446406.5:-88 uc057xvt.1:-88 AK056774:-103 AK092486:-103 AK311497:-103 AK309887:-103 ENST00000414790.5:-136 NR_131223:-136 NR_002196:-136 uc021qby.2:-136 BC115700:224 BC053636:253 BC110657:253 ENST00000439725.5:267 uc021qca.2:267 BC015952:370 BC069247:464 BC063564:490 BC098439:492 |
TATA-Box annotation
| Distance to TSS: | 142 |
|---|---|
| Nearest PromoterID: | NR_002196 |
| Entrez ID: | 283120 |
| Nearest Unigene: | Hs.533566 |
| Nearest Refseq: | NR_002196 |
| Nearest Ensembl: | ENSG00000130600 |
| Gene Name: | "H19, imprinted maternally expressed transcript (non-protein coding)" |
| Gene Alias: | ASM |
| Gene Description: | "H19, imprinted maternally expressed transcript (non-protein coding)" |
| Gene Type: | ncRNA |
| CpG%: | 0.02 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
