Difference between revisions of "TSS:Hg 118118.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.025 |distance_to_tss=92 |entrez_id=283120 |gc_percent=0.641791 |gene_alias=ASM|ASM1|BWS|D11S813E|LINC00008|NCRNA00008|WT2 |gene_description="H19, im...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |ASM1= | ||
| + | |BWS= | ||
| + | |D11S813E= | ||
| + | |LINC00008= | ||
| + | |NCRNA00008= | ||
| + | |WT2= | ||
| + | |all_trans=ENST00000412788.5:0 ENST00000422826.1:0 ENST00000411754.5:0 ENST00000431095.5:0 uc001lva.5:0 uc057xvs.1:0 uc057xvv.1:0 uc057xvw.1:0 BC040852:0 BC040073:0 ENST00000446406.5:-9 uc057xvt.1:-9 AK056774:-24 AK092486:-24 AK311497:-24 AK309887:-24 ENST00000414790.5:-57 NR_131223:-57 NR_002196:-57 uc021qby.2:-57 BC002550:92 BC115700:245 BC053636:274 BC110657:274 ENST00000439725.5:288 uc021qca.2:288 BC015952:391 BC069247:485 | ||
| + | |chr=chr11 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| + | |distance=0 | ||
|distance_to_tss=92 | |distance_to_tss=92 | ||
| + | |end=1997818 | ||
|entrez_id=283120 | |entrez_id=283120 | ||
|gc_percent=0.641791 | |gc_percent=0.641791 | ||
|gene_alias=ASM|ASM1|BWS|D11S813E|LINC00008|NCRNA00008|WT2 | |gene_alias=ASM|ASM1|BWS|D11S813E|LINC00008|NCRNA00008|WT2 | ||
|gene_description="H19, imprinted maternally expressed transcript (non-protein coding)" | |gene_description="H19, imprinted maternally expressed transcript (non-protein coding)" | ||
| − | |gene_name=H19 | + | |gene_id=283120 |
| + | |gene_name="H19, imprinted maternally expressed transcript (non-protein coding)" | ||
| + | |gene_source=HGNC:4713 | ||
| + | |gene_symbol=H19 | ||
| + | |gene_synonyms=ASM ASM1 D11S813E LINC00008 NCRNA00008 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:4713 | ||
|nearest_ensembl=ENSG00000130600 | |nearest_ensembl=ENSG00000130600 | ||
|nearest_promoter_id=NR_002196 | |nearest_promoter_id=NR_002196 | ||
|nearest_refseq=NR_002196 | |nearest_refseq=NR_002196 | ||
|nearest_unigene=Hs.533566 | |nearest_unigene=Hs.533566 | ||
| + | |num_trans=28 | ||
| + | |species=human | ||
| + | |start=1997747 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000412788.5 ENST00000422826.1 ENST00000411754.5 ENST00000431095.5 uc001lva.5 uc057xvs.1 uc057xvv.1 uc057xvw.1 BC040852 BC040073 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_118118.1 | |tss_id=hg_118118.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 06:37, 9 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000412788.5 ENST00000422826.1 ENST00000411754.5 ENST00000431095.5 uc001lva.5 uc057xvs.1 uc057xvv.1 uc057xvw.1 BC040852 BC040073 |
|---|---|
| Distance: | 0 |
| Num_trans: | 28 |
| All_trans: | ENST00000412788.5:0 ENST00000422826.1:0 ENST00000411754.5:0 ENST00000431095.5:0 uc001lva.5:0 uc057xvs.1:0 uc057xvv.1:0 uc057xvw.1:0 BC040852:0 BC040073:0 ENST00000446406.5:-9 uc057xvt.1:-9 AK056774:-24 AK092486:-24 AK311497:-24 AK309887:-24 ENST00000414790.5:-57 NR_131223:-57 NR_002196:-57 uc021qby.2:-57 BC002550:92 BC115700:245 BC053636:274 BC110657:274 ENST00000439725.5:288 uc021qca.2:288 BC015952:391 BC069247:485 |
TATA-Box annotation
| Distance to TSS: | 92 |
|---|---|
| Nearest PromoterID: | NR_002196 |
| Entrez ID: | 283120 |
| Nearest Unigene: | Hs.533566 |
| Nearest Refseq: | NR_002196 |
| Nearest Ensembl: | ENSG00000130600 |
| Gene Name: | "H19, imprinted maternally expressed transcript (non-protein coding)" |
| Gene Alias: | ASM |
| Gene Description: | "H19, imprinted maternally expressed transcript (non-protein coding)" |
| Gene Type: | ncRNA |
| CpG%: | 0.025 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
