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Difference between revisions of "TSS:Hg 118386.1"

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(Created page with "{{TSSDetail |cpg_percent=0.025 |distance_to_tss=47 |entrez_id=85363 |gc_percent=0.517413 |gene_alias=RNF88|TRIM5alpha |gene_description=tripartite motif containing 5 |gene_nam...")
 
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{{TSSDetail
 
{{TSSDetail
 +
|TRIM5alpha=
 +
|all_trans=ENST00000380034.7:0 ENST00000396847.7:0 ENST00000419850.1:0 NM_033093:0 NM_033092:0 NM_033034:0 uc001mbm.3:0 uc001mbp.4:0 uc057yii.1:0 AK027593:0 BX647152:0 BC021258:0
 +
|chr=chr11
 
|cpg_percent=0.025
 
|cpg_percent=0.025
 +
|distance=0
 
|distance_to_tss=47
 
|distance_to_tss=47
 +
|end=5685114
 
|entrez_id=85363
 
|entrez_id=85363
 
|gc_percent=0.517413
 
|gc_percent=0.517413
 
|gene_alias=RNF88|TRIM5alpha
 
|gene_alias=RNF88|TRIM5alpha
 
|gene_description=tripartite motif containing 5
 
|gene_description=tripartite motif containing 5
|gene_name=TRIM5
+
|gene_id=85363
 +
|gene_name=tripartite motif containing 5
 +
|gene_source=HGNC:16276
 +
|gene_symbol=TRIM5
 +
|gene_synonyms=RNF88 TRIM5alpha
 
|gene_type=protein-coding
 
|gene_type=protein-coding
 +
|hgnc_mgi_id=HGNC:16276
 
|nearest_ensembl=ENSG00000132256
 
|nearest_ensembl=ENSG00000132256
 
|nearest_promoter_id=NM_033093
 
|nearest_promoter_id=NM_033093
 
|nearest_refseq=NM_033034
 
|nearest_refseq=NM_033034
 
|nearest_unigene=Hs.125300
 
|nearest_unigene=Hs.125300
 +
|num_trans=12
 +
|species=human
 +
|start=5685009
 +
|strand=-
 +
|transcript_name=ENST00000380034.7 ENST00000396847.7 ENST00000419850.1 NM_033093 NM_033092 NM_033034 uc001mbm.3 uc001mbp.4 uc057yii.1 AK027593 BX647152 BC021258
 +
|tss_classification=yes
 
|tss_id=hg_118386.1
 
|tss_id=hg_118386.1
 +
|tss_score=1
 +
|uniprot_id=C9JWN8 Q9C035
 
}}
 
}}

Revision as of 06:48, 9 March 2018

Basic information about the TSS


TSS ID:hg_118386.1
Species:human
Chr:chr11
TSS Classification:yes
Start:5685009
End:5685114
Strand:-
TSS Score:1
Start of the center position in the TSS region:
End of the center position in the TSS region:



Gene and protein annotation


Transcript_name:ENST00000380034.7 ENST00000396847.7 ENST00000419850.1 NM_033093 NM_033092 NM_033034 uc001mbm.3 uc001mbp.4 uc057yii.1 AK027593 BX647152 BC021258
Distance:0
GeneID:85363
HGNC/MGI_ID:HGNC:16276
UniProt_ID:C9JWN8 Q9C035
Gene_name:tripartite motif containing 5
Gene_symbol:TRIM5
Gene_synonyms:RNF88 TRIM5alpha
Gene_source:HGNC:16276



Transcript annotation


Transcript_name:ENST00000380034.7 ENST00000396847.7 ENST00000419850.1 NM_033093 NM_033092 NM_033034 uc001mbm.3 uc001mbp.4 uc057yii.1 AK027593 BX647152 BC021258
Distance:0
Num_trans:12
All_trans:ENST00000380034.7:0 ENST00000396847.7:0 ENST00000419850.1:0 NM_033093:0 NM_033092:0 NM_033034:0 uc001mbm.3:0 uc001mbp.4:0 uc057yii.1:0 AK027593:0 BX647152:0 BC021258:0



TATA-Box annotation


Distance to TSS:47
Nearest PromoterID:NM_033093
Entrez ID:85363
Nearest Unigene:Hs.125300
Nearest Refseq:NM_033034
Nearest Ensembl:ENSG00000132256
Gene Name:tripartite motif containing 5
Gene Alias:RNF88
Gene Description:tripartite motif containing 5
Gene Type:protein-coding
CpG%:0.025
GC%:0.517413
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):