Difference between revisions of "TSS:Hg 11860.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.11 |distance_to_tss=498 |entrez_id=8761 |gc_percent=0.59204 |gene_alias=APP-1|APP1|PABP4|iPABP |gene_description=poly(A) binding protein cytoplasmic...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |APP1= | ||
| + | |PABP4= | ||
| + | |all_trans=ENST00000372858.7:-41 uc001cdl.3:-41 BC029969:-41 ENST00000372862.7:89 uc057fbl.1:89 U33818:355 ENST00000372857.7:-384 uc010oiv.2:-384 U75686:-384 ENST00000372856.7:-391 uc001cdm.3:-391 BC065540:-391 BC071591:-425 ENST00000531243.2:-427 uc057fcd.1:-427 ENST00000451091.2:-430 uc057fcc.1:-430 BC094755:-430 NM_001135654:-489 NM_001135653:-489 NM_003819:-489 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| + | |distance=-41 | ||
|distance_to_tss=498 | |distance_to_tss=498 | ||
| + | |end=39576360 | ||
|entrez_id=8761 | |entrez_id=8761 | ||
|gc_percent=0.59204 | |gc_percent=0.59204 | ||
|gene_alias=APP-1|APP1|PABP4|iPABP | |gene_alias=APP-1|APP1|PABP4|iPABP | ||
|gene_description=poly(A) binding protein cytoplasmic 4 | |gene_description=poly(A) binding protein cytoplasmic 4 | ||
| − | |gene_name=PABPC4 | + | |gene_id=8761 |
| + | |gene_name="poly(A) binding protein, cytoplasmic 4 (inducible form)" | ||
| + | |gene_source=HGNC:8557 | ||
| + | |gene_symbol=PABPC4 | ||
| + | |gene_synonyms=APP-1 iPABP | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:8557 | ||
| + | |iPABP= | ||
|nearest_ensembl=ENSG00000090621 | |nearest_ensembl=ENSG00000090621 | ||
|nearest_promoter_id=NM_001135654 | |nearest_promoter_id=NM_001135654 | ||
|nearest_refseq=NM_003819 | |nearest_refseq=NM_003819 | ||
|nearest_unigene=Hs.169900 | |nearest_unigene=Hs.169900 | ||
| + | |num_trans=21 | ||
| + | |species=human | ||
| + | |start=39576341 | ||
| + | |strand=- | ||
|tata_box="48(GCCTCTTAAAGG,-,0.00),49(CCTCTTAAAGGA,+,0.00)" | |tata_box="48(GCCTCTTAAAGG,-,0.00),49(CCTCTTAAAGGA,+,0.00)" | ||
| + | |transcript_name=ENST00000372858.7 uc001cdl.3 BC029969 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_11860.1 | |tss_id=hg_11860.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q13310 | ||
}} | }} | ||
Revision as of 06:57, 9 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000372858.7 uc001cdl.3 BC029969 |
|---|---|
| Distance: | -41 |
| Num_trans: | 21 |
| All_trans: | ENST00000372858.7:-41 uc001cdl.3:-41 BC029969:-41 ENST00000372862.7:89 uc057fbl.1:89 U33818:355 ENST00000372857.7:-384 uc010oiv.2:-384 U75686:-384 ENST00000372856.7:-391 uc001cdm.3:-391 BC065540:-391 BC071591:-425 ENST00000531243.2:-427 uc057fcd.1:-427 ENST00000451091.2:-430 uc057fcc.1:-430 BC094755:-430 NM_001135654:-489 NM_001135653:-489 NM_003819:-489 |
TATA-Box annotation
| Distance to TSS: | 498 |
|---|---|
| Nearest PromoterID: | NM_001135654 |
| Entrez ID: | 8761 |
| Nearest Unigene: | Hs.169900 |
| Nearest Refseq: | NM_003819 |
| Nearest Ensembl: | ENSG00000090621 |
| Gene Name: | "poly(A) binding protein, cytoplasmic 4 (inducible form)" |
| Gene Alias: | APP-1 |
| Gene Description: | poly(A) binding protein cytoplasmic 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.59204 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "48(GCCTCTTAAAGG,-,0.00),49(CCTCTTAAAGGA,+,0.00)" |
