Difference between revisions of "TSS:Hg 119554.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.045 |distance_to_tss=2815 |entrez_id=29763 |gc_percent=0.641791 |gene_alias=SDPIII |gene_description=protein kinase C and casein kinase substrate in...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000530405.5:-249 uc058bbh.1:-249 DQ893156:330 DQ896450:330 AB528520:332 KJ893695:333 CU680096:333 | ||
| + | |chr=chr11 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| + | |distance=-249 | ||
|distance_to_tss=2815 | |distance_to_tss=2815 | ||
| + | |end=47183072 | ||
|entrez_id=29763 | |entrez_id=29763 | ||
|gc_percent=0.641791 | |gc_percent=0.641791 | ||
|gene_alias=SDPIII | |gene_alias=SDPIII | ||
|gene_description=protein kinase C and casein kinase substrate in neurons 3 | |gene_description=protein kinase C and casein kinase substrate in neurons 3 | ||
| − | |gene_name=PACSIN3 | + | |gene_id=29763 |
| + | |gene_name=protein kinase C and casein kinase substrate in neurons 3 | ||
| + | |gene_source=HGNC:8572 | ||
| + | |gene_symbol=PACSIN3 | ||
| + | |gene_synonyms=SDPIII | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:8572 | ||
|nearest_ensembl=ENSG00000165912 | |nearest_ensembl=ENSG00000165912 | ||
|nearest_promoter_id=NM_001184975 | |nearest_promoter_id=NM_001184975 | ||
|nearest_refseq=NM_016223 | |nearest_refseq=NM_016223 | ||
|nearest_unigene=Hs.334639 | |nearest_unigene=Hs.334639 | ||
| + | |num_trans=7 | ||
| + | |species=human | ||
| + | |start=47183060 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000530405.5 uc058bbh.1 | ||
| + | |tss_classification=no | ||
|tss_id=hg_119554.1 | |tss_id=hg_119554.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=E9PJ33 | ||
}} | }} | ||
Revision as of 07:38, 9 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000530405.5 uc058bbh.1 |
|---|---|
| Distance: | -249 |
| Num_trans: | 7 |
| All_trans: | ENST00000530405.5:-249 uc058bbh.1:-249 DQ893156:330 DQ896450:330 AB528520:332 KJ893695:333 CU680096:333 |
TATA-Box annotation
| Distance to TSS: | 2815 |
|---|---|
| Nearest PromoterID: | NM_001184975 |
| Entrez ID: | 29763 |
| Nearest Unigene: | Hs.334639 |
| Nearest Refseq: | NM_016223 |
| Nearest Ensembl: | ENSG00000165912 |
| Gene Name: | protein kinase C and casein kinase substrate in neurons 3 |
| Gene Alias: | SDPIII |
| Gene Description: | protein kinase C and casein kinase substrate in neurons 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
