Difference between revisions of "TSS:Hg 121135.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.02 |distance_to_tss=26890 |entrez_id=100128494 |gc_percent=0.61194 |gene_alias=- |gene_description=uncharacterized LOC100128494 |gene_name=LOC100128...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000542977.5:39 uc058exo.1:39 ENST00000536119.5:90 uc058exr.1:90 AK309041:90 AK290509:97 ENST00000544238.5:-339 uc058exs.1:-339 ENST00000535947.5:466 uc058exx.1:466 | ||
| + | |chr=chr11 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| + | |distance=39 | ||
|distance_to_tss=26890 | |distance_to_tss=26890 | ||
| + | |end=72041186 | ||
|entrez_id=100128494 | |entrez_id=100128494 | ||
|gc_percent=0.61194 | |gc_percent=0.61194 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=uncharacterized LOC100128494 | |gene_description=uncharacterized LOC100128494 | ||
| − | |gene_name= | + | |gene_id=4926 |
| + | |gene_name=nuclear mitotic apparatus protein 1 | ||
| + | |gene_source=HGNC:8059 | ||
| + | |gene_symbol=NUMA1 | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:8059 | ||
|nearest_ensembl=ENSG00000251143 | |nearest_ensembl=ENSG00000251143 | ||
|nearest_promoter_id=NR_104178 | |nearest_promoter_id=NR_104178 | ||
|nearest_refseq=NR_104178 | |nearest_refseq=NR_104178 | ||
|nearest_unigene=Hs.713607 | |nearest_unigene=Hs.713607 | ||
| + | |num_trans=10 | ||
| + | |species=human | ||
| + | |start=72041175 | ||
| + | |strand=- | ||
|tata_box="11(TGCCTTTAAAGA,-,0.00),12(GCCTTTAAAGAA,+,0.00),12(GCCTTTAAAGAA,-,0.00)" | |tata_box="11(TGCCTTTAAAGA,-,0.00),12(GCCTTTAAAGAA,+,0.00),12(GCCTTTAAAGAA,-,0.00)" | ||
| + | |transcript_name=ENST00000542977.5 uc058exo.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_121135.1 | |tss_id=hg_121135.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=F5H4J1 | ||
}} | }} | ||
Revision as of 08:46, 9 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000542977.5 uc058exo.1 |
|---|---|
| Distance: | 39 |
| Num_trans: | 10 |
| All_trans: | ENST00000542977.5:39 uc058exo.1:39 ENST00000536119.5:90 uc058exr.1:90 AK309041:90 AK290509:97 ENST00000544238.5:-339 uc058exs.1:-339 ENST00000535947.5:466 uc058exx.1:466 |
TATA-Box annotation
| Distance to TSS: | 26890 |
|---|---|
| Nearest PromoterID: | NR_104178 |
| Entrez ID: | 100128494 |
| Nearest Unigene: | Hs.713607 |
| Nearest Refseq: | NR_104178 |
| Nearest Ensembl: | ENSG00000251143 |
| Gene Name: | nuclear mitotic apparatus protein 1 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC100128494 |
| Gene Type: | ncRNA |
| CpG%: | 0.02 |
| GC%: | 0.61194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "11(TGCCTTTAAAGA,-,0.00),12(GCCTTTAAAGAA,+,0.00),12(GCCTTTAAAGAA,-,0.00)" |
