Difference between revisions of "TSS:Hg 121174.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.06 |distance_to_tss=19154 |entrez_id=101928555 |gc_percent=0.626866 |gene_alias=- |gene_description=long intergenic non-protein coding RNA 1537 |gen...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000538299.1:-187 uc058fbs.1:-187 | ||
| + | |chr=chr11 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| + | |distance=-187 | ||
|distance_to_tss=19154 | |distance_to_tss=19154 | ||
| + | |end=72589834 | ||
|entrez_id=101928555 | |entrez_id=101928555 | ||
|gc_percent=0.626866 | |gc_percent=0.626866 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=long intergenic non-protein coding RNA 1537 | |gene_description=long intergenic non-protein coding RNA 1537 | ||
| − | |gene_name= | + | |gene_id=5138 |
| + | |gene_name=phosphodiesterase 2A | ||
| + | |gene_source=HGNC:8777 | ||
| + | |gene_symbol=PDE2A | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:8777 | ||
|nearest_ensembl=ENSG00000227467 | |nearest_ensembl=ENSG00000227467 | ||
|nearest_promoter_id=NR_126364 | |nearest_promoter_id=NR_126364 | ||
|nearest_refseq=NR_126364 | |nearest_refseq=NR_126364 | ||
|nearest_unigene=Hs.376950 | |nearest_unigene=Hs.376950 | ||
| + | |num_trans=2 | ||
| + | |species=human | ||
| + | |start=72589786 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000538299.1 uc058fbs.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_121174.1 | |tss_id=hg_121174.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=H0YG13 | ||
}} | }} | ||
Revision as of 08:48, 9 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000538299.1 uc058fbs.1 |
|---|---|
| Distance: | -187 |
| Num_trans: | 2 |
| All_trans: | ENST00000538299.1:-187 uc058fbs.1:-187 |
TATA-Box annotation
| Distance to TSS: | 19154 |
|---|---|
| Nearest PromoterID: | NR_126364 |
| Entrez ID: | 101928555 |
| Nearest Unigene: | Hs.376950 |
| Nearest Refseq: | NR_126364 |
| Nearest Ensembl: | ENSG00000227467 |
| Gene Name: | phosphodiesterase 2A |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 1537 |
| Gene Type: | ncRNA |
| CpG%: | 0.06 |
| GC%: | 0.626866 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
