Difference between revisions of "TSS:Hg 121179.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.145 |distance_to_tss=32 |entrez_id=5138 |gc_percent=0.78607 |gene_alias=CGS-PDE|PDE2A1|PED2A4|cGSPDE |gene_description=phosphodiesterase 2A |gene_na...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PDE2A1= | ||
| + | |PED2A4= | ||
| + | |all_trans=ENST00000376450.7:0 ENST00000539367.5:0 ENST00000536308.5:0 ENST00000543575.5:0 ENST00000541998.5:0 uc001osn.4:0 uc058fbk.1:0 uc058fbt.1:0 uc058fbv.1:0 uc058fbx.1:0 AK131525:0 AK092278:0 AY495089:0 ENST00000444035.6:-12 ENST00000544570.5:-12 ENST00000543750.5:-12 NM_001143839:-12 NM_001243784:-12 uc001oso.4:-12 uc010rra.3:-12 uc058fbu.1:-12 | ||
| + | |cGSPDE= | ||
| + | |chr=chr11 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
| + | |distance=0 | ||
|distance_to_tss=32 | |distance_to_tss=32 | ||
| + | |end=72642448 | ||
|entrez_id=5138 | |entrez_id=5138 | ||
|gc_percent=0.78607 | |gc_percent=0.78607 | ||
|gene_alias=CGS-PDE|PDE2A1|PED2A4|cGSPDE | |gene_alias=CGS-PDE|PDE2A1|PED2A4|cGSPDE | ||
|gene_description=phosphodiesterase 2A | |gene_description=phosphodiesterase 2A | ||
| − | |gene_name=PDE2A | + | |gene_id=5138 |
| + | |gene_name=phosphodiesterase 2A | ||
| + | |gene_source=HGNC:8777 | ||
| + | |gene_symbol=PDE2A | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:8777 | ||
|nearest_ensembl=ENSG00000186642 | |nearest_ensembl=ENSG00000186642 | ||
|nearest_promoter_id=NM_001243784 | |nearest_promoter_id=NM_001243784 | ||
|nearest_refseq=NM_002599 | |nearest_refseq=NM_002599 | ||
|nearest_unigene=Hs.503163 | |nearest_unigene=Hs.503163 | ||
| + | |num_trans=21 | ||
| + | |species=human | ||
| + | |start=72642407 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000376450.7 ENST00000539367.5 ENST00000536308.5 ENST00000543575.5 ENST00000541998.5 uc001osn.4 uc058fbk.1 uc058fbt.1 uc058fbv.1 uc058fbx.1 AK131525 AK092278 AY495089 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_121179.1 | |tss_id=hg_121179.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=F5H2R8 F5H3Z7 O00408 | ||
}} | }} | ||
Revision as of 08:48, 9 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000376450.7 ENST00000539367.5 ENST00000536308.5 ENST00000543575.5 ENST00000541998.5 uc001osn.4 uc058fbk.1 uc058fbt.1 uc058fbv.1 uc058fbx.1 AK131525 AK092278 AY495089 |
|---|---|
| Distance: | 0 |
| Num_trans: | 21 |
| All_trans: | ENST00000376450.7:0 ENST00000539367.5:0 ENST00000536308.5:0 ENST00000543575.5:0 ENST00000541998.5:0 uc001osn.4:0 uc058fbk.1:0 uc058fbt.1:0 uc058fbv.1:0 uc058fbx.1:0 AK131525:0 AK092278:0 AY495089:0 ENST00000444035.6:-12 ENST00000544570.5:-12 ENST00000543750.5:-12 NM_001143839:-12 NM_001243784:-12 uc001oso.4:-12 uc010rra.3:-12 uc058fbu.1:-12 |
TATA-Box annotation
| Distance to TSS: | 32 |
|---|---|
| Nearest PromoterID: | NM_001243784 |
| Entrez ID: | 5138 |
| Nearest Unigene: | Hs.503163 |
| Nearest Refseq: | NM_002599 |
| Nearest Ensembl: | ENSG00000186642 |
| Gene Name: | phosphodiesterase 2A |
| Gene Alias: | CGS-PDE |
| Gene Description: | phosphodiesterase 2A |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
