Difference between revisions of "TSS:Hg 121180.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.17 |distance_to_tss=1 |entrez_id=5138 |gc_percent=0.835821 |gene_alias=CGS-PDE|PDE2A1|PED2A4|cGSPDE |gene_description=phosphodiesterase 2A |gene_nam...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PDE2A1= | ||
| + | |PED2A4= | ||
| + | |all_trans=ENST00000444035.6:0 ENST00000544570.5:0 ENST00000543750.5:0 NM_001143839:0 NM_001243784:0 uc001oso.4:0 uc010rra.3:0 uc058fbu.1:0 ENST00000539367.5:8 uc058fbk.1:8 AK092278:17 ENST00000376450.7:20 uc001osn.4:20 AK131525:20 ENST00000541998.5:25 uc058fbx.1:25 AY495089:28 ENST00000543575.5:29 uc058fbv.1:29 ENST00000536308.5:40 uc058fbt.1:40 | ||
| + | |cGSPDE= | ||
| + | |chr=chr11 | ||
|cpg_percent=0.17 | |cpg_percent=0.17 | ||
| + | |distance=0 | ||
|distance_to_tss=1 | |distance_to_tss=1 | ||
| + | |end=72642467 | ||
|entrez_id=5138 | |entrez_id=5138 | ||
|gc_percent=0.835821 | |gc_percent=0.835821 | ||
|gene_alias=CGS-PDE|PDE2A1|PED2A4|cGSPDE | |gene_alias=CGS-PDE|PDE2A1|PED2A4|cGSPDE | ||
|gene_description=phosphodiesterase 2A | |gene_description=phosphodiesterase 2A | ||
| − | |gene_name=PDE2A | + | |gene_id=5138 |
| + | |gene_name=phosphodiesterase 2A | ||
| + | |gene_source=HGNC:8777 | ||
| + | |gene_symbol=PDE2A | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:8777 | ||
|nearest_ensembl=ENSG00000186642 | |nearest_ensembl=ENSG00000186642 | ||
|nearest_promoter_id=NM_001243784 | |nearest_promoter_id=NM_001243784 | ||
|nearest_refseq=NM_002599 | |nearest_refseq=NM_002599 | ||
|nearest_unigene=Hs.503163 | |nearest_unigene=Hs.503163 | ||
| + | |num_trans=21 | ||
| + | |species=human | ||
| + | |start=72642450 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000444035.6 ENST00000544570.5 ENST00000543750.5 NM_001143839 NM_001243784 uc001oso.4 uc010rra.3 uc058fbu.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_121180.1 | |tss_id=hg_121180.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=F5H143 O00408 Q8IW54 | ||
}} | }} | ||
Revision as of 08:48, 9 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000444035.6 ENST00000544570.5 ENST00000543750.5 NM_001143839 NM_001243784 uc001oso.4 uc010rra.3 uc058fbu.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 21 |
| All_trans: | ENST00000444035.6:0 ENST00000544570.5:0 ENST00000543750.5:0 NM_001143839:0 NM_001243784:0 uc001oso.4:0 uc010rra.3:0 uc058fbu.1:0 ENST00000539367.5:8 uc058fbk.1:8 AK092278:17 ENST00000376450.7:20 uc001osn.4:20 AK131525:20 ENST00000541998.5:25 uc058fbx.1:25 AY495089:28 ENST00000543575.5:29 uc058fbv.1:29 ENST00000536308.5:40 uc058fbt.1:40 |
TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NM_001243784 |
| Entrez ID: | 5138 |
| Nearest Unigene: | Hs.503163 |
| Nearest Refseq: | NM_002599 |
| Nearest Ensembl: | ENSG00000186642 |
| Gene Name: | phosphodiesterase 2A |
| Gene Alias: | CGS-PDE |
| Gene Description: | phosphodiesterase 2A |
| Gene Type: | protein-coding |
| CpG%: | 0.17 |
| GC%: | 0.835821 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
