Difference between revisions of "TSS:Hg 121182.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.02 |distance_to_tss=9 |entrez_id=5138 |gc_percent=0.631841 |gene_alias=CGS-PDE|PDE2A1|PED2A4|cGSPDE |gene_description=phosphodiesterase 2A |gene_nam...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PDE2A1= | ||
| + | |PED2A4= | ||
| + | |all_trans=ENST00000546038.1:-2 uc058fce.1:-2 ENST00000334456.9:-5 NM_002599:-5 uc010rrc.3:-5 ENST00000542969.2:7 uc058fcd.1:7 ENST00000535701.1:18 uc058fcc.1:18 BC040974:21 AY495088:23 AK312434:24 ENST00000418754.6:32 uc010rrd.3:32 AK295676:32 U67733:72 ENST00000540380.5:-143 uc058fca.1:-143 AB384917:233 | ||
| + | |cGSPDE= | ||
| + | |chr=chr11 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| + | |distance=-2 | ||
|distance_to_tss=9 | |distance_to_tss=9 | ||
| + | |end=72674448 | ||
|entrez_id=5138 | |entrez_id=5138 | ||
|gc_percent=0.631841 | |gc_percent=0.631841 | ||
|gene_alias=CGS-PDE|PDE2A1|PED2A4|cGSPDE | |gene_alias=CGS-PDE|PDE2A1|PED2A4|cGSPDE | ||
|gene_description=phosphodiesterase 2A | |gene_description=phosphodiesterase 2A | ||
| − | |gene_name=PDE2A | + | |gene_id=5138 |
| + | |gene_name=phosphodiesterase 2A | ||
| + | |gene_source=HGNC:8777 | ||
| + | |gene_symbol=PDE2A | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:8777 | ||
|nearest_ensembl=ENSG00000186642 | |nearest_ensembl=ENSG00000186642 | ||
|nearest_promoter_id=NM_002599 | |nearest_promoter_id=NM_002599 | ||
|nearest_refseq=NM_002599 | |nearest_refseq=NM_002599 | ||
|nearest_unigene=Hs.503163 | |nearest_unigene=Hs.503163 | ||
| + | |num_trans=19 | ||
| + | |species=human | ||
| + | |start=72674439 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000546038.1 uc058fce.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_121182.1 | |tss_id=hg_121182.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=F5H2Z0 | ||
}} | }} | ||
Revision as of 08:48, 9 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000546038.1 uc058fce.1 |
|---|---|
| Distance: | -2 |
| Num_trans: | 19 |
| All_trans: | ENST00000546038.1:-2 uc058fce.1:-2 ENST00000334456.9:-5 NM_002599:-5 uc010rrc.3:-5 ENST00000542969.2:7 uc058fcd.1:7 ENST00000535701.1:18 uc058fcc.1:18 BC040974:21 AY495088:23 AK312434:24 ENST00000418754.6:32 uc010rrd.3:32 AK295676:32 U67733:72 ENST00000540380.5:-143 uc058fca.1:-143 AB384917:233 |
TATA-Box annotation
| Distance to TSS: | 9 |
|---|---|
| Nearest PromoterID: | NM_002599 |
| Entrez ID: | 5138 |
| Nearest Unigene: | Hs.503163 |
| Nearest Refseq: | NM_002599 |
| Nearest Ensembl: | ENSG00000186642 |
| Gene Name: | phosphodiesterase 2A |
| Gene Alias: | CGS-PDE |
| Gene Description: | phosphodiesterase 2A |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
