Difference between revisions of "TSS:Hg 121794.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=-5 |entrez_id=50507 |gc_percent=0.422886 |gene_alias=KOX|KOX-1|RENOX |gene_description=NADPH oxidase 4 |gene_name=NOX4 |gene_ty...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |KOX-1= | ||
| + | |RENOX= | ||
| + | |all_trans=NM_001291927:0 AK298328:0 ENST00000343727.9:-137 uc058gja.1:-137 NM_001291929:231 AK311381:235 ENST00000528341.5:240 uc009yvr.4:240 AK298357:240 ENST00000531342.5:-252 ENST00000375979.7:-252 uc001pcw.4:-252 uc001pcx.4:-252 AF261943:-252 AJ704725:-252 AJ704726:-252 AJ704727:-252 AJ704728:-252 AJ704729:-252 AY288918:-252 CU691812:-255 JF432404:-256 KJ893751:-256 AK311389:-299 BC040105:-324 ENST00000534731.5:-334 ENST00000527626.5:-334 uc001pcv.4:-334 uc010rtu.3:-334 AK291830:-334 AK298376:-334 AF254621:-338 ENST00000529343.5:-363 uc058gjd.1:-363 ENST00000525196.5:-366 uc009yvp.4:-366 BC034780:-366 ENST00000525278.1:-400 uc058gje.1:-400 ENST00000263317.8:-491 uc001pct.4:-491 AB041035:-491 | ||
| + | |chr=chr11 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| + | |distance=0 | ||
|distance_to_tss=-5 | |distance_to_tss=-5 | ||
| + | |end=89490994 | ||
|entrez_id=50507 | |entrez_id=50507 | ||
|gc_percent=0.422886 | |gc_percent=0.422886 | ||
|gene_alias=KOX|KOX-1|RENOX | |gene_alias=KOX|KOX-1|RENOX | ||
|gene_description=NADPH oxidase 4 | |gene_description=NADPH oxidase 4 | ||
| − | |gene_name=NOX4 | + | |gene_id=50507 |
| + | |gene_name=NADPH oxidase 4 | ||
| + | |gene_source=HGNC:7891 | ||
| + | |gene_symbol=NOX4 | ||
| + | |gene_synonyms=KOX KOX-1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:7891 | ||
|nearest_ensembl=ENSG00000086991 | |nearest_ensembl=ENSG00000086991 | ||
|nearest_promoter_id=NM_001291927 | |nearest_promoter_id=NM_001291927 | ||
|nearest_refseq=NM_016931 | |nearest_refseq=NM_016931 | ||
|nearest_unigene=Hs.371036 | |nearest_unigene=Hs.371036 | ||
| + | |num_trans=42 | ||
| + | |species=human | ||
| + | |start=89490971 | ||
| + | |strand=- | ||
|tata_box="73(CCCTTTAAACAT,+,0.00)" | |tata_box="73(CCCTTTAAACAT,+,0.00)" | ||
| + | |transcript_name=NM_001291927 AK298328 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_121794.1 | |tss_id=hg_121794.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B7Z523 Q9NPH5 | ||
}} | }} | ||
Revision as of 09:14, 9 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_001291927 AK298328 |
|---|---|
| Distance: | 0 |
| Num_trans: | 42 |
| All_trans: | NM_001291927:0 AK298328:0 ENST00000343727.9:-137 uc058gja.1:-137 NM_001291929:231 AK311381:235 ENST00000528341.5:240 uc009yvr.4:240 AK298357:240 ENST00000531342.5:-252 ENST00000375979.7:-252 uc001pcw.4:-252 uc001pcx.4:-252 AF261943:-252 AJ704725:-252 AJ704726:-252 AJ704727:-252 AJ704728:-252 AJ704729:-252 AY288918:-252 CU691812:-255 JF432404:-256 KJ893751:-256 AK311389:-299 BC040105:-324 ENST00000534731.5:-334 ENST00000527626.5:-334 uc001pcv.4:-334 uc010rtu.3:-334 AK291830:-334 AK298376:-334 AF254621:-338 ENST00000529343.5:-363 uc058gjd.1:-363 ENST00000525196.5:-366 uc009yvp.4:-366 BC034780:-366 ENST00000525278.1:-400 uc058gje.1:-400 ENST00000263317.8:-491 uc001pct.4:-491 AB041035:-491 |
TATA-Box annotation
| Distance to TSS: | -5 |
|---|---|
| Nearest PromoterID: | NM_001291927 |
| Entrez ID: | 50507 |
| Nearest Unigene: | Hs.371036 |
| Nearest Refseq: | NM_016931 |
| Nearest Ensembl: | ENSG00000086991 |
| Gene Name: | NADPH oxidase 4 |
| Gene Alias: | KOX |
| Gene Description: | NADPH oxidase 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.422886 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "73(CCCTTTAAACAT,+,0.00)" |
