Difference between revisions of "TSS:Hg 121796.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.125 |distance_to_tss=235 |entrez_id=50507 |gc_percent=0.751244 |gene_alias=KOX|KOX-1|RENOX |gene_description=NADPH oxidase 4 |gene_name=NOX4 |gene_t...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |KOX-1= | ||
| + | |RENOX= | ||
| + | |all_trans=ENST00000534731.5:0 ENST00000527626.5:0 uc001pcv.4:0 uc010rtu.3:0 AK291830:0 AF254621:0 AK298376:0 BC040105:3 ENST00000529343.5:-18 uc058gjd.1:-18 ENST00000525196.5:-21 uc009yvp.4:-21 BC034780:-21 AK311389:28 ENST00000525278.1:-55 uc058gje.1:-55 JF432404:71 KJ893751:71 CU691812:72 ENST00000531342.5:75 ENST00000375979.7:75 uc001pcw.4:75 uc001pcx.4:75 AF261943:75 AJ704725:75 AJ704726:75 AJ704727:75 AJ704728:75 AJ704729:75 AY288918:75 ENST00000263317.8:-146 uc001pct.4:-146 AB041035:-146 ENST00000343727.9:190 uc058gja.1:190 ENST00000393282.2:-226 NM_001143836:-226 NM_001291926:-226 NM_016931:-226 NR_120406:-226 uc058gjf.1:-226 BC051371:-226 NM_001291927:343 AK298328:343 | ||
| + | |chr=chr11 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| + | |distance=0 | ||
|distance_to_tss=235 | |distance_to_tss=235 | ||
| + | |end=89491339 | ||
|entrez_id=50507 | |entrez_id=50507 | ||
|gc_percent=0.751244 | |gc_percent=0.751244 | ||
|gene_alias=KOX|KOX-1|RENOX | |gene_alias=KOX|KOX-1|RENOX | ||
|gene_description=NADPH oxidase 4 | |gene_description=NADPH oxidase 4 | ||
| − | |gene_name=NOX4 | + | |gene_id=50507 |
| + | |gene_name=NADPH oxidase 4 | ||
| + | |gene_source=HGNC:7891 | ||
| + | |gene_symbol=NOX4 | ||
| + | |gene_synonyms=KOX KOX-1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:7891 | ||
|nearest_ensembl=ENSG00000086991 | |nearest_ensembl=ENSG00000086991 | ||
|nearest_promoter_id=NM_001143836 | |nearest_promoter_id=NM_001143836 | ||
|nearest_refseq=NM_016931 | |nearest_refseq=NM_016931 | ||
|nearest_unigene=Hs.371036 | |nearest_unigene=Hs.371036 | ||
| + | |num_trans=44 | ||
| + | |species=human | ||
| + | |start=89491320 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000534731.5 ENST00000527626.5 uc001pcv.4 uc010rtu.3 AK291830 AF254621 AK298376 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_121796.1 | |tss_id=hg_121796.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B7Z535 E9PR43 Q9NPH5 | ||
}} | }} | ||
Revision as of 09:14, 9 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000534731.5 ENST00000527626.5 uc001pcv.4 uc010rtu.3 AK291830 AF254621 AK298376 |
|---|---|
| Distance: | 0 |
| Num_trans: | 44 |
| All_trans: | ENST00000534731.5:0 ENST00000527626.5:0 uc001pcv.4:0 uc010rtu.3:0 AK291830:0 AF254621:0 AK298376:0 BC040105:3 ENST00000529343.5:-18 uc058gjd.1:-18 ENST00000525196.5:-21 uc009yvp.4:-21 BC034780:-21 AK311389:28 ENST00000525278.1:-55 uc058gje.1:-55 JF432404:71 KJ893751:71 CU691812:72 ENST00000531342.5:75 ENST00000375979.7:75 uc001pcw.4:75 uc001pcx.4:75 AF261943:75 AJ704725:75 AJ704726:75 AJ704727:75 AJ704728:75 AJ704729:75 AY288918:75 ENST00000263317.8:-146 uc001pct.4:-146 AB041035:-146 ENST00000343727.9:190 uc058gja.1:190 ENST00000393282.2:-226 NM_001143836:-226 NM_001291926:-226 NM_016931:-226 NR_120406:-226 uc058gjf.1:-226 BC051371:-226 NM_001291927:343 AK298328:343 |
TATA-Box annotation
| Distance to TSS: | 235 |
|---|---|
| Nearest PromoterID: | NM_001143836 |
| Entrez ID: | 50507 |
| Nearest Unigene: | Hs.371036 |
| Nearest Refseq: | NM_016931 |
| Nearest Ensembl: | ENSG00000086991 |
| Gene Name: | NADPH oxidase 4 |
| Gene Alias: | KOX |
| Gene Description: | NADPH oxidase 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.751244 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
