Difference between revisions of "TSS:Hg 233751.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000608917.1:221 uc057nzq.1:221 NR_125801:253 |chr=chr1 |cpg_percent=0.065 |distance=221 |distance_to_tss=30 |end=186680401 |entrez_id=5743 |gc_per...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |COX2= | ||
| + | |GRIPGHS= | ||
| + | |PGG/HS= | ||
| + | |PGHS-2= | ||
| + | |PHS-2= | ||
|all_trans=ENST00000608917.1:221 uc057nzq.1:221 NR_125801:253 | |all_trans=ENST00000608917.1:221 uc057nzq.1:221 NR_125801:253 | ||
|chr=chr1 | |chr=chr1 | ||
| Line 6: | Line 11: | ||
|distance_to_tss=30 | |distance_to_tss=30 | ||
|end=186680401 | |end=186680401 | ||
| + | |end_of_center_position=19485557 | ||
|entrez_id=5743 | |entrez_id=5743 | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
| − | |gene_alias=COX | + | |gene_alias=COX-2 |
|gene_description=prostaglandin-endoperoxide synthase 2 | |gene_description=prostaglandin-endoperoxide synthase 2 | ||
|gene_id=103752588 | |gene_id=103752588 | ||
| Line 16: | Line 22: | ||
|gene_synonyms=PACER PTGS2-AS1 | |gene_synonyms=PACER PTGS2-AS1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hCox-2= | ||
|hgnc_mgi_id=HGNC:50552 | |hgnc_mgi_id=HGNC:50552 | ||
|nearest_ensembl=ENSG00000073756 | |nearest_ensembl=ENSG00000073756 | ||
| Line 24: | Line 31: | ||
|species=human | |species=human | ||
|start=186680392 | |start=186680392 | ||
| + | |start_of_center_position=19485556 | ||
|strand=+ | |strand=+ | ||
|tata_box="50(CTTTTTATAAGA,+,0.00)" | |tata_box="50(CTTTTTATAAGA,+,0.00)" | ||
Revision as of 18:54, 10 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 19485556 |
|---|---|
| End of the center position in the TSS region: | 19485557 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000608917.1 uc057nzq.1 |
|---|---|
| Distance: | 221 |
| Num_trans: | 3 |
| All_trans: | ENST00000608917.1:221 uc057nzq.1:221 NR_125801:253 |
TATA-Box annotation
| Distance to TSS: | 30 |
|---|---|
| Nearest PromoterID: | NM_000963 |
| Entrez ID: | 5743 |
| Nearest Unigene: | Hs.196384 |
| Nearest Refseq: | NM_000963 |
| Nearest Ensembl: | ENSG00000073756 |
| Gene Name: | PTGS2 antisense NFKB1 complex-mediated expression regulator RNA |
| Gene Alias: | COX-2 |
| Gene Description: | prostaglandin-endoperoxide synthase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "50(CTTTTTATAAGA,+,0.00)" |
