Difference between revisions of "TSS:Hg 12225.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=NM_001290405:0 NM_001290404:0 S53691:69 ENST00000371884.6:153 NM_001287347:153 uc001cqy.3:153 S53245:153 ENST00000464796.5:-319 uc001cqz.2:-319 S53678:-...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |TCL5= | ||
|all_trans=NM_001290405:0 NM_001290404:0 S53691:69 ENST00000371884.6:153 NM_001287347:153 uc001cqy.3:153 S53245:153 ENST00000464796.5:-319 uc001cqz.2:-319 S53678:-319 S53686:-319 NM_003189:-434 NM_001290406:-434 NM_001290403:-434 | |all_trans=NM_001290405:0 NM_001290404:0 S53691:69 ENST00000371884.6:153 NM_001287347:153 uc001cqy.3:153 S53245:153 ENST00000464796.5:-319 uc001cqz.2:-319 S53678:-319 S53686:-319 NM_003189:-434 NM_001290406:-434 NM_001290403:-434 | ||
| + | |bHLHa17= | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=5 | |distance_to_tss=5 | ||
|end=47231901 | |end=47231901 | ||
| + | |end_of_center_position=47231885 | ||
|entrez_id=6886 | |entrez_id=6886 | ||
|gc_percent=0.557214 | |gc_percent=0.557214 | ||
| − | |gene_alias=SCL | + | |gene_alias=SCL |
|gene_description="TAL bHLH transcription factor 1, erythroid differentiation factor" | |gene_description="TAL bHLH transcription factor 1, erythroid differentiation factor" | ||
|gene_id=6886 | |gene_id=6886 | ||
| Line 24: | Line 27: | ||
|species=human | |species=human | ||
|start=47231867 | |start=47231867 | ||
| + | |start_of_center_position=47231884 | ||
|strand=- | |strand=- | ||
| + | |tal-1= | ||
|transcript_name=NM_001290405 NM_001290404 | |transcript_name=NM_001290405 NM_001290404 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 00:27, 11 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 47231884 |
|---|---|
| End of the center position in the TSS region: | 47231885 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_001290405 NM_001290404 |
|---|---|
| Distance: | 0 |
| Num_trans: | 14 |
| All_trans: | NM_001290405:0 NM_001290404:0 S53691:69 ENST00000371884.6:153 NM_001287347:153 uc001cqy.3:153 S53245:153 ENST00000464796.5:-319 uc001cqz.2:-319 S53678:-319 S53686:-319 NM_003189:-434 NM_001290406:-434 NM_001290403:-434 |
TATA-Box annotation
| Distance to TSS: | 5 |
|---|---|
| Nearest PromoterID: | NM_001290404 |
| Entrez ID: | 6886 |
| Nearest Unigene: | Hs.705618 |
| Nearest Refseq: | NM_003189 |
| Nearest Ensembl: | ENSG00000162367 |
| Gene Name: | T-cell acute lymphocytic leukemia 1 |
| Gene Alias: | SCL |
| Gene Description: | "TAL bHLH transcription factor 1, erythroid differentiation factor" |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.557214 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
