Difference between revisions of "TSS:Hg 232303.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000491130.5:-32 NM_001042512:-32 uc057tcj.1:-32 CU687276:133 |chr=chr10 |cpg_percent=0.005 |distance=-32 |distance_to_tss=32 |end=48175111 |entrez...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PDZK4= | ||
| + | |PDZK5C= | ||
|all_trans=ENST00000491130.5:-32 NM_001042512:-32 uc057tcj.1:-32 CU687276:133 | |all_trans=ENST00000491130.5:-32 NM_001042512:-32 uc057tcj.1:-32 CU687276:133 | ||
|chr=chr10 | |chr=chr10 | ||
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|distance_to_tss=32 | |distance_to_tss=32 | ||
|end=48175111 | |end=48175111 | ||
| + | |end_of_center_position=49366 | ||
|entrez_id=143162 | |entrez_id=143162 | ||
|gc_percent=0.567164 | |gc_percent=0.567164 | ||
| − | |gene_alias=PDZD5C | + | |gene_alias=PDZD5C |
|gene_description=FERM and PDZ domain containing 2 | |gene_description=FERM and PDZ domain containing 2 | ||
|gene_id=143162 | |gene_id=143162 | ||
| Line 24: | Line 27: | ||
|species=human | |species=human | ||
|start=48175110 | |start=48175110 | ||
| + | |start_of_center_position=49365 | ||
|strand=- | |strand=- | ||
|tata_box="-62(GCTTTTATATCC,+,0.00)" | |tata_box="-62(GCTTTTATATCC,+,0.00)" | ||
Revision as of 22:18, 11 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 49365 |
|---|---|
| End of the center position in the TSS region: | 49366 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000491130.5 NM_001042512 uc057tcj.1 |
|---|---|
| Distance: | -32 |
| Num_trans: | 4 |
| All_trans: | ENST00000491130.5:-32 NM_001042512:-32 uc057tcj.1:-32 CU687276:133 |
TATA-Box annotation
| Distance to TSS: | 32 |
|---|---|
| Nearest PromoterID: | NM_001042512 |
| Entrez ID: | 143162 |
| Nearest Unigene: | Hs.664786 |
| Nearest Refseq: | NM_152428 |
| Nearest Ensembl: | ENSG00000170324 |
| Gene Name: | FERM and PDZ domain containing 2 |
| Gene Alias: | PDZD5C |
| Gene Description: | FERM and PDZ domain containing 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.567164 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-62(GCTTTTATATCC,+,0.00)" |
