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Difference between revisions of "TSS:Hg 109297.1"

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Line 8: Line 8:
 
|distance_to_tss=26
 
|distance_to_tss=26
 
|end=48274880
 
|end=48274880
 +
|end_of_center_position=48274873
 
|entrez_id=143162
 
|entrez_id=143162
 
|gc_percent=0.567164
 
|gc_percent=0.567164
|gene_alias=PDZD5C|PDZK4|PDZK5C
+
|gene_alias=PDZD5C
 
|gene_description=FERM and PDZ domain containing 2
 
|gene_description=FERM and PDZ domain containing 2
 
|gene_id=143162
 
|gene_id=143162
Line 26: Line 27:
 
|species=human
 
|species=human
 
|start=48274864
 
|start=48274864
 +
|start_of_center_position=48274872
 
|strand=-
 
|strand=-
 
|transcript_name=ENST00000374201.7 uc001jgi.5 CR749241
 
|transcript_name=ENST00000374201.7 uc001jgi.5 CR749241

Revision as of 03:05, 12 May 2019

Basic information about the TSS


TSS ID:hg_109297.1
Species:human
Chr:chr10
TSS Classification:yes
Start:48274864
End:48274880
Strand:-
TSS Score:1
Start of the center position in the TSS region:48274872
End of the center position in the TSS region:48274873



Gene and protein annotation


Transcript_name:ENST00000374201.7 uc001jgi.5 CR749241
Distance:0
GeneID:143162
HGNC/MGI_ID:HGNC:28572
UniProt_ID:Q68DX3
Gene_name:FERM and PDZ domain containing 2
Gene_symbol:FRMPD2
Gene_synonyms:MGC35285
Gene_source:HGNC:28572



Transcript annotation


Transcript_name:ENST00000374201.7 uc001jgi.5 CR749241
Distance:0
Num_trans:10
All_trans:ENST00000374201.7:0 uc001jgi.5:0 CR749241:0 NM_001018071:-18 AK303923:188 ENST00000486151.5:191 uc057tcm.1:191 AK131386:191 BC156408:300 BC157131:300



TATA-Box annotation


Distance to TSS:26
Nearest PromoterID:NM_001018071
Entrez ID:143162
Nearest Unigene:Hs.664786
Nearest Refseq:NM_152428
Nearest Ensembl:ENSG00000170324
Gene Name:FERM and PDZ domain containing 2
Gene Alias:PDZD5C
Gene Description:FERM and PDZ domain containing 2
Gene Type:protein-coding
CpG%:0.02
GC%:0.567164
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):