Difference between revisions of "TSS:Hg 109655.1"
From referenceTSS
| Line 9: | Line 9: | ||
|distance_to_tss=21 | |distance_to_tss=21 | ||
|end=62816373 | |end=62816373 | ||
| + | |end_of_center_position=62816360 | ||
|entrez_id=1959 | |entrez_id=1959 | ||
|gc_percent=0.512438 | |gc_percent=0.512438 | ||
| − | |gene_alias=AT591 | + | |gene_alias=AT591 |
|gene_description=early growth response 2 | |gene_description=early growth response 2 | ||
|gene_id=1959 | |gene_id=1959 | ||
| Line 27: | Line 28: | ||
|species=human | |species=human | ||
|start=62816345 | |start=62816345 | ||
| + | |start_of_center_position=62816359 | ||
|strand=- | |strand=- | ||
|tata_box="-80(GTCCATATATGG,-,0.00),-78(CCATATATGGGC,+,0.00),-40(GCCCATAAATAC,-,0.00)" | |tata_box="-80(GTCCATATATGG,-,0.00),-78(CCATATATGGGC,+,0.00),-40(GCCCATAAATAC,-,0.00)" | ||
Revision as of 04:09, 12 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 62816359 |
|---|---|
| End of the center position in the TSS region: | 62816360 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000242480.3 ENST00000411732.2 NM_001136179 NM_001136177 NM_000399 uc001jmi.4 uc010qin.3 BC035625 CR749641 |
|---|---|
| Distance: | 0 |
| Num_trans: | 20 |
| All_trans: | ENST00000242480.3:0 ENST00000411732.2:0 NM_001136179:0 NM_001136177:0 NM_000399:0 uc001jmi.4:0 uc010qin.3:0 BC035625:0 CR749641:0 AK091399:31 AF139463:184 J04076:264 KJ901404:317 KR710863:317 KR710864:317 KR710865:317 AB464513:317 KU178040:317 KU178041:317 CU690136:319 |
TATA-Box annotation
| Distance to TSS: | 21 |
|---|---|
| Nearest PromoterID: | NM_001136179 |
| Entrez ID: | 1959 |
| Nearest Unigene: | Hs.1395 |
| Nearest Refseq: | NM_000399 |
| Nearest Ensembl: | ENSG00000122877 |
| Gene Name: | early growth response 2 |
| Gene Alias: | AT591 |
| Gene Description: | early growth response 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.512438 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-80(GTCCATATATGG,-,0.00),-78(CCATATATGGGC,+,0.00),-40(GCCCATAAATAC,-,0.00)" |
