Difference between revisions of "TSS:Hg 105972.1"
From referenceTSS
| Line 16: | Line 16: | ||
|distance_to_tss=-38 | |distance_to_tss=-38 | ||
|end=86668414 | |end=86668414 | ||
| + | |end_of_center_position=86668412 | ||
|entrez_id=11155 | |entrez_id=11155 | ||
|gc_percent=0.631841 | |gc_percent=0.631841 | ||
| − | |gene_alias=CMD1C | + | |gene_alias=CMD1C |
|gene_description=LIM domain binding 3 | |gene_description=LIM domain binding 3 | ||
|gene_id=11155 | |gene_id=11155 | ||
| Line 34: | Line 35: | ||
|species=human | |species=human | ||
|start=86668408 | |start=86668408 | ||
| + | |start_of_center_position=86668411 | ||
|strand=+ | |strand=+ | ||
|tata_box="41(GTCCATTTATGG,-,0.00),43(CCATTTATGGGC,+,0.00)" | |tata_box="41(GTCCATTTATGG,-,0.00),43(CCATTTATGGGC,+,0.00)" | ||
Revision as of 06:12, 12 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 86668411 |
|---|---|
| End of the center position in the TSS region: | 86668412 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000429277.6 NM_001171610 uc010qmm.3 |
|---|---|
| Distance: | 35 |
| Num_trans: | 44 |
| All_trans: | ENST00000429277.6:35 NM_001171610:35 uc010qmm.3:35 ENST00000623056.3:93 uc057uqg.1:93 AK304760:93 AK300692:96 AK297871:97 NM_001080116:150 ENST00000372066.7:199 uc001kdr.4:199 AJ133766:199 BC010929:253 NM_007078:255 NM_001080115:255 NM_001171611:255 NM_001080114:255 ENST00000361373.8:257 uc001kdv.4:257 AB014513:257 BC111457:273 KJ898368:276 KR710344:276 KR710345:276 KR710346:276 KR710347:276 AB383921:277 ENST00000542786.1:278 ENST00000623007.3:278 ENST00000372056.8:278 ENST00000263066.10:278 uc057uqh.1:278 uc009xsy.4:278 uc001kds.4:278 uc001kdu.4:278 AF276807:278 AF276808:278 AF276809:278 KF772970:278 AJ133767:278 AJ133768:278 KU178543:278 KU178544:278 KU178545:278 |
TATA-Box annotation
| Distance to TSS: | -38 |
|---|---|
| Nearest PromoterID: | NM_001171610 |
| Entrez ID: | 11155 |
| Nearest Unigene: | Hs.657271 |
| Nearest Refseq: | NM_007078 |
| Nearest Ensembl: | ENSG00000122367 |
| Gene Name: | LIM domain binding 3 |
| Gene Alias: | CMD1C |
| Gene Description: | LIM domain binding 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "41(GTCCATTTATGG,-,0.00),43(CCATTTATGGGC,+,0.00)" |
