Difference between revisions of "TSS:Mm 50217.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |R75157= | ||
|all_trans=ENSMUST00000203329.2:1 ENSMUST00000203846.2:151 ENSMUST00000203652.2:199 NM_001289617:199 NM_001289619:199 NM_001289618:199 NM_011777:199 uc009bqz.2:199 uc009bqy.2:199 uc009bra.2:199 uc009brb.2:199 AK147812:199 ENSMUST00000070635.12:240 BC054775:240 X99063:241 ENSMUST00000203290.2:404 ENSMUST00000203401.2:404 AK161709:404 AK165290:404 ENSMUST00000203626.1:409 ENSMUST00000164375.3:410 AK031415:410 AK170571:426 AK076491:428 AK035743:429 AK090110:440 ENSMUST00000203849.1:442 AK183092:453 | |all_trans=ENSMUST00000203329.2:1 ENSMUST00000203846.2:151 ENSMUST00000203652.2:199 NM_001289617:199 NM_001289619:199 NM_001289618:199 NM_011777:199 uc009bqz.2:199 uc009bqy.2:199 uc009bra.2:199 uc009brb.2:199 AK147812:199 ENSMUST00000070635.12:240 BC054775:240 X99063:241 ENSMUST00000203290.2:404 ENSMUST00000203401.2:404 AK161709:404 AK165290:404 ENSMUST00000203626.1:409 ENSMUST00000164375.3:410 AK031415:410 AK170571:426 AK076491:428 AK035743:429 AK090110:440 ENSMUST00000203849.1:442 AK183092:453 | ||
|chr=chr6 | |chr=chr6 | ||
| Line 6: | Line 7: | ||
|distance_to_tss=-216 | |distance_to_tss=-216 | ||
|end=42349629 | |end=42349629 | ||
| + | |end_of_center_position=42349612 | ||
|entrez_id=22793 | |entrez_id=22793 | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
| − | |gene_alias=9530098H06Rik | + | |gene_alias=9530098H06Rik |
|gene_description=zyxin | |gene_description=zyxin | ||
|gene_id=22793 | |gene_id=22793 | ||
| Line 24: | Line 26: | ||
|species=mouse | |species=mouse | ||
|start=42349594 | |start=42349594 | ||
| + | |start_of_center_position=42349611 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENSMUST00000203329.2 | |transcript_name=ENSMUST00000203329.2 | ||
Revision as of 10:00, 12 May 2019
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 42349611 |
|---|---|
| End of the center position in the TSS region: | 42349612 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENSMUST00000203329.2 |
|---|---|
| Distance: | 1 |
| Num_trans: | 28 |
| All_trans: | ENSMUST00000203329.2:1 ENSMUST00000203846.2:151 ENSMUST00000203652.2:199 NM_001289617:199 NM_001289619:199 NM_001289618:199 NM_011777:199 uc009bqz.2:199 uc009bqy.2:199 uc009bra.2:199 uc009brb.2:199 AK147812:199 ENSMUST00000070635.12:240 BC054775:240 X99063:241 ENSMUST00000203290.2:404 ENSMUST00000203401.2:404 AK161709:404 AK165290:404 ENSMUST00000203626.1:409 ENSMUST00000164375.3:410 AK031415:410 AK170571:426 AK076491:428 AK035743:429 AK090110:440 ENSMUST00000203849.1:442 AK183092:453 |
TATA-Box annotation
| Distance to TSS: | -216 |
|---|---|
| Nearest PromoterID: | NM_011777 |
| Entrez ID: | 22793 |
| Nearest Unigene: | Mm.282303 |
| Nearest Refseq: | NM_011777 |
| Nearest Ensembl: | ENSMUSG00000029860 |
| Gene Name: | zyxin |
| Gene Alias: | 9530098H06Rik |
| Gene Description: | zyxin |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
