Difference between revisions of "TSS:Mm 99405.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000133930.7:0 ENSMUST00000100392.4:0 NM_153544:0 uc007lqz.1:0 uc011yfq.1:0 AK029811:0 BC030867:11 BC108338:13 BC085317:87 |chr=chr11 |cpg_perce...") |
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| Line 6: | Line 6: | ||
|distance_to_tss=-17 | |distance_to_tss=-17 | ||
|end=102248888 | |end=102248888 | ||
| + | |end_of_center_position=102248866 | ||
|entrez_id=217216 | |entrez_id=217216 | ||
|gc_percent=0.542289 | |gc_percent=0.542289 | ||
| Line 24: | Line 25: | ||
|species=mouse | |species=mouse | ||
|start=102248842 | |start=102248842 | ||
| + | |start_of_center_position=102248865 | ||
|strand=+ | |strand=+ | ||
|tata_box="-86(TTCCCTTTAAGG,-,0.00),-84(CCCTTTAAGGCT,+,0.00),-83(CCTTTAAGGCTG,+,0.00),-16(TTCCCTTTAAGG,-,0.00),-15(TCCCTTTAAGGG,-,0.00),-14(CCCTTTAAGGGG,+,0.00),-14(CCCTTTAAGGGG,-,0.00),-13(CCTTTAAGGGGG,+,0.00),78(CGGTCTTAAAGA,-,0.00)" | |tata_box="-86(TTCCCTTTAAGG,-,0.00),-84(CCCTTTAAGGCT,+,0.00),-83(CCTTTAAGGCTG,+,0.00),-16(TTCCCTTTAAGG,-,0.00),-15(TCCCTTTAAGGG,-,0.00),-14(CCCTTTAAGGGG,+,0.00),-14(CCCTTTAAGGGG,-,0.00),-13(CCTTTAAGGGGG,+,0.00),78(CGGTCTTAAAGA,-,0.00)" | ||
Revision as of 10:09, 12 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 102248865 |
|---|---|
| End of the center position in the TSS region: | 102248866 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000133930.7 ENSMUST00000100392.4 NM_153544 uc007lqz.1 uc011yfq.1 AK029811 |
|---|---|
| Distance: | 0 |
| Num_trans: | 9 |
| All_trans: | ENSMUST00000133930.7:0 ENSMUST00000100392.4:0 NM_153544:0 uc007lqz.1:0 uc011yfq.1:0 AK029811:0 BC030867:11 BC108338:13 BC085317:87 |
TATA-Box annotation
| Distance to TSS: | -17 |
|---|---|
| Nearest PromoterID: | NM_153544 |
| Entrez ID: | 217216 |
| Nearest Unigene: | Mm.247335 |
| Nearest Refseq: | NM_153544 |
| Nearest Ensembl: | ENSMUSG00000034773 |
| Gene Name: | cDNA sequence BC030867 |
| Gene Alias: | - |
| Gene Description: | cDNA sequence BC030867 |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.542289 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-86(TTCCCTTTAAGG,-,0.00),-84(CCCTTTAAGGCT,+,0.00),-83(CCTTTAAGGCTG,+,0.00),-16(TTCCCTTTAAGG,-,0.00),-15(TCCCTTTAAGGG,-,0.00),-14(CCCTTTAAGGGG,+,0.00),-14(CCCTTTAAGGGG,-,0.00),-13(CCTTTAAGGGGG,+,0.00),78(CGGTCTTAAAGA,-,0.00)" |
