Difference between revisions of "TSS:Mm 99455.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AK182648:-11 ENSMUST00000123500.2:247 AK211032:-256 AK219696:-267 AK193719:-286 ENSMUST00000138451.1:-343 ENSMUST00000176953.1:-346 |chr=chr11 |cpg_perc...") |
|||
| Line 6: | Line 6: | ||
|distance_to_tss=4136 | |distance_to_tss=4136 | ||
|end=102434471 | |end=102434471 | ||
| + | |end_of_center_position=102434458 | ||
|entrez_id=14824 | |entrez_id=14824 | ||
| + | |epithelin= | ||
|gc_percent=0.512438 | |gc_percent=0.512438 | ||
| − | |gene_alias=Pgrn | + | |gene_alias=Pgrn |
|gene_description=granulin | |gene_description=granulin | ||
|gene_id=14824 | |gene_id=14824 | ||
| Line 24: | Line 26: | ||
|species=mouse | |species=mouse | ||
|start=102434444 | |start=102434444 | ||
| + | |start_of_center_position=102434457 | ||
|strand=+ | |strand=+ | ||
|tata_box="78(GCCCATATATAG,-,0.00),80(CCATATATAGTC,+,0.00)" | |tata_box="78(GCCCATATATAG,-,0.00),80(CCATATATAGTC,+,0.00)" | ||
Revision as of 10:18, 12 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 102434457 |
|---|---|
| End of the center position in the TSS region: | 102434458 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK182648 |
|---|---|
| Distance: | -11 |
| Num_trans: | 7 |
| All_trans: | AK182648:-11 ENSMUST00000123500.2:247 AK211032:-256 AK219696:-267 AK193719:-286 ENSMUST00000138451.1:-343 ENSMUST00000176953.1:-346 |
TATA-Box annotation
| Distance to TSS: | 4136 |
|---|---|
| Nearest PromoterID: | NM_008175 |
| Entrez ID: | 14824 |
| Nearest Unigene: | Mm.1568 |
| Nearest Refseq: | NM_008175 |
| Nearest Ensembl: | ENSMUSG00000034708 |
| Gene Name: | granulin |
| Gene Alias: | Pgrn |
| Gene Description: | granulin |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.512438 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "78(GCCCATATATAG,-,0.00),80(CCATATATAGTC,+,0.00)" |
