Difference between revisions of "TSS:Mm 99608.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |OTTMUSG00000003182= | ||
| + | |OTTMUSG00000003183= | ||
|all_trans=uc007lwv.2:0 AK013098:0 ENSMUST00000106956.9:-87 ENSMUST00000130588.7:-351 ENSMUST00000106957.7:-383 | |all_trans=uc007lwv.2:0 AK013098:0 ENSMUST00000106956.9:-87 ENSMUST00000130588.7:-351 ENSMUST00000106957.7:-383 | ||
|chr=chr11 | |chr=chr11 | ||
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|distance_to_tss=-15179 | |distance_to_tss=-15179 | ||
|end=104577387 | |end=104577387 | ||
| + | |end_of_center_position=104577378 | ||
|entrez_id=100415912 | |entrez_id=100415912 | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
| − | |gene_alias=Gm11664 | + | |gene_alias=Gm11664 |
|gene_description=predicted gene 11665 | |gene_description=predicted gene 11665 | ||
|gene_id=17896 | |gene_id=17896 | ||
| Line 24: | Line 27: | ||
|species=mouse | |species=mouse | ||
|start=104577367 | |start=104577367 | ||
| + | |start_of_center_position=104577377 | ||
|strand=+ | |strand=+ | ||
|tata_box="-98(CCTTTTATAGTC,+,0.00)" | |tata_box="-98(CCTTTTATAGTC,+,0.00)" | ||
Revision as of 10:42, 12 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 104577377 |
|---|---|
| End of the center position in the TSS region: | 104577378 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | uc007lwv.2 AK013098 |
|---|---|
| Distance: | 0 |
| Num_trans: | 5 |
| All_trans: | uc007lwv.2:0 AK013098:0 ENSMUST00000106956.9:-87 ENSMUST00000130588.7:-351 ENSMUST00000106957.7:-383 |
TATA-Box annotation
| Distance to TSS: | -15179 |
|---|---|
| Nearest PromoterID: | NR_130177 |
| Entrez ID: | 100415912 |
| Nearest Unigene: | Mm.446786 |
| Nearest Refseq: | NR_130177 |
| Nearest Ensembl: | |
| Gene Name: | "myosin, light polypeptide 4" |
| Gene Alias: | Gm11664 |
| Gene Description: | predicted gene 11665 |
| Gene Type: | ncRNA |
| CpG%: | 0.01 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-98(CCTTTTATAGTC,+,0.00)" |
