Difference between revisions of "TSS:Hg 118113.1"
From referenceTSS
| Line 12: | Line 12: | ||
|distance_to_tss=406 | |distance_to_tss=406 | ||
|end=1997469 | |end=1997469 | ||
| + | |end_of_center_position=1997469 | ||
|entrez_id=283120 | |entrez_id=283120 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
| − | |gene_alias=ASM | + | |gene_alias=ASM |
|gene_description="H19, imprinted maternally expressed transcript (non-protein coding)" | |gene_description="H19, imprinted maternally expressed transcript (non-protein coding)" | ||
|gene_id=283120 | |gene_id=283120 | ||
| Line 30: | Line 31: | ||
|species=human | |species=human | ||
|start=1997468 | |start=1997468 | ||
| + | |start_of_center_position=1997468 | ||
|strand=- | |strand=- | ||
|transcript_name=BC053636 BC110657 | |transcript_name=BC053636 BC110657 | ||
Revision as of 12:08, 12 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 1997468 |
|---|---|
| End of the center position in the TSS region: | 1997469 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | BC053636 BC110657 |
|---|---|
| Distance: | -5 |
| Num_trans: | 39 |
| All_trans: | BC053636:-5 BC110657:-5 ENST00000439725.5:9 uc021qca.2:9 BC115700:-34 BC015952:112 BC002550:-187 BC069247:206 BC063564:232 BC098439:234 ENST00000411861.5:252 uc021qbz.2:252 BC063626:252 BC023213:282 BC040852:-292 BC040073:-309 BC053637:310 BC007513:324 ENST00000422826.1:-328 ENST00000411754.5:-328 uc057xvs.1:-328 uc057xvv.1:-328 ENST00000412788.5:-345 uc001lva.5:-345 ENST00000431095.5:-346 uc057xvw.1:-346 ENST00000446406.5:-358 uc057xvt.1:-358 BC006831:364 AK056774:-373 AK092486:-373 AK311497:-373 AK309887:-373 ENST00000414790.5:-406 NR_131223:-406 NR_002196:-406 uc021qby.2:-406 ENST00000417089.5:444 uc057xvu.1:444 |
TATA-Box annotation
| Distance to TSS: | 406 |
|---|---|
| Nearest PromoterID: | NR_002196 |
| Entrez ID: | 283120 |
| Nearest Unigene: | Hs.533566 |
| Nearest Refseq: | NR_002196 |
| Nearest Ensembl: | ENSG00000130600 |
| Gene Name: | "H19, imprinted maternally expressed transcript (non-protein coding)" |
| Gene Alias: | ASM |
| Gene Description: | "H19, imprinted maternally expressed transcript (non-protein coding)" |
| Gene Type: | ncRNA |
| CpG%: | 0.035 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
