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Difference between revisions of "TSS:Hg 188114.1"

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(Created page with "{{TSSDetail |all_trans=ENST00000423479.7:0 ENST00000502686.6:0 ENST00000433949.7:0 ENST00000539382.5:0 ENST00000608903.5:0 ENST00000608858.5:0 ENST00000608108.1:0 NM_001269050...")
 
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{{TSSDetail
 
{{TSSDetail
 +
|CT27=
 +
|CTCF-T=
 +
|HMGB1L1=
 
|all_trans=ENST00000423479.7:0 ENST00000502686.6:0 ENST00000433949.7:0 ENST00000539382.5:0 ENST00000608903.5:0 ENST00000608858.5:0 ENST00000608108.1:0 NM_001269050:0 NM_001269055:0 uc010giw.2:0 uc010gjf.4:0 uc010gjg.5:0 uc010gji.3:0 uc031rui.2:0 uc061xyp.1:0 uc021wff.2:0 DQ778111:2 AF336042:2 DQ778124:2 DQ778125:2 DQ778126:2 DQ778127:2 DQ778128:2 DQ778129:2 BC130486:17 NM_001269043:-20 NM_001269054:-20 NM_001269049:-20 BC060763:-22 AK313990:-33 ENST00000243914.7:-102 uc010gjb.3:-102 AK128070:-102 ENST00000608263.5:233 ENST00000426658.6:233 ENST00000422109.6:233 ENST00000432255.6:233 ENST00000608720.5:233 ENST00000607923.5:233 ENST00000608158.5:233 NM_001269041:233 NM_001269044:233 NR_072975:233 NM_001269048:233 NM_001269052:233 uc010gix.2:233 uc061xym.1:233 uc061xyn.1:233 uc010gjh.2:233 uc021wfe.2:233 uc061xyo.1:233 uc010gjk.3:233 DQ778110:233 DQ778115:233 DQ778116:233 DQ778117:233 DQ778118:233 DQ778121:233 DQ778119:233 DQ778120:233 DQ778114:233 DQ294738:-470 ENST00000371196.6:-472 uc010gjc.2:-472 AY071919:-472
 
|all_trans=ENST00000423479.7:0 ENST00000502686.6:0 ENST00000433949.7:0 ENST00000539382.5:0 ENST00000608903.5:0 ENST00000608858.5:0 ENST00000608108.1:0 NM_001269050:0 NM_001269055:0 uc010giw.2:0 uc010gjf.4:0 uc010gjg.5:0 uc010gji.3:0 uc031rui.2:0 uc061xyp.1:0 uc021wff.2:0 DQ778111:2 AF336042:2 DQ778124:2 DQ778125:2 DQ778126:2 DQ778127:2 DQ778128:2 DQ778129:2 BC130486:17 NM_001269043:-20 NM_001269054:-20 NM_001269049:-20 BC060763:-22 AK313990:-33 ENST00000243914.7:-102 uc010gjb.3:-102 AK128070:-102 ENST00000608263.5:233 ENST00000426658.6:233 ENST00000422109.6:233 ENST00000432255.6:233 ENST00000608720.5:233 ENST00000607923.5:233 ENST00000608158.5:233 NM_001269041:233 NM_001269044:233 NR_072975:233 NM_001269048:233 NM_001269052:233 uc010gix.2:233 uc061xym.1:233 uc061xyn.1:233 uc010gjh.2:233 uc021wfe.2:233 uc061xyo.1:233 uc010gjk.3:233 DQ778110:233 DQ778115:233 DQ778116:233 DQ778117:233 DQ778118:233 DQ778121:233 DQ778119:233 DQ778120:233 DQ778114:233 DQ294738:-470 ENST00000371196.6:-472 uc010gjc.2:-472 AY071919:-472
 
|chr=chr20
 
|chr=chr20
 
|cpg_percent=0.11
 
|cpg_percent=0.11
 +
|dJ579F20.2=
 
|distance=0
 
|distance=0
 
|distance_to_tss=4
 
|distance_to_tss=4
 
|end=57525107
 
|end=57525107
 +
|end_of_center_position=57525104
 
|entrez_id=140690
 
|entrez_id=140690
 
|gc_percent=0.736318
 
|gc_percent=0.736318
−
|gene_alias=BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2
+
|gene_alias=BORIS
 
|gene_description=CCCTC-binding factor like
 
|gene_description=CCCTC-binding factor like
 
|gene_id=140690
 
|gene_id=140690
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|species=human
 
|species=human
 
|start=57525099
 
|start=57525099
 +
|start_of_center_position=57525103
 
|strand=-
 
|strand=-
 
|transcript_name=ENST00000423479.7 ENST00000502686.6 ENST00000433949.7 ENST00000539382.5 ENST00000608903.5 ENST00000608858.5 ENST00000608108.1 NM_001269050 NM_001269055 uc010giw.2 uc010gjf.4 uc010gjg.5 uc010gji.3 uc031rui.2 uc061xyp.1 uc021wff.2
 
|transcript_name=ENST00000423479.7 ENST00000502686.6 ENST00000433949.7 ENST00000539382.5 ENST00000608903.5 ENST00000608858.5 ENST00000608108.1 NM_001269050 NM_001269055 uc010giw.2 uc010gjf.4 uc010gjg.5 uc010gji.3 uc031rui.2 uc061xyp.1 uc021wff.2

Revision as of 13:08, 12 May 2019

Basic information about the TSS

TSS ID:hg_188114.1
Species:human
Chr:chr20
TSS Classification:yes
Start:57525099
End:57525107
Strand:-
TSS Score:1
Start of the center position in the TSS region:57525103
End of the center position in the TSS region:57525104



Gene and protein annotation

Transcript_name:ENST00000423479.7 ENST00000502686.6 ENST00000433949.7 ENST00000539382.5 ENST00000608903.5 ENST00000608858.5 ENST00000608108.1 NM_001269050 NM_001269055 uc010giw.2 uc010gjf.4 uc010gjg.5 uc010gji.3 uc031rui.2 uc061xyp.1 uc021wff.2
Distance:0
GeneID:140690
HGNC/MGI_ID:HGNC:16234
UniProt_ID:Q8NI51
Gene_name:CCCTC-binding factor like
Gene_symbol:CTCFL
Gene_synonyms:BORIS CT27 dJ579F20.2
Gene_source:HGNC:16234



Transcript annotation

Transcript_name:ENST00000423479.7 ENST00000502686.6 ENST00000433949.7 ENST00000539382.5 ENST00000608903.5 ENST00000608858.5 ENST00000608108.1 NM_001269050 NM_001269055 uc010giw.2 uc010gjf.4 uc010gjg.5 uc010gji.3 uc031rui.2 uc061xyp.1 uc021wff.2
Distance:0
Num_trans:65
All_trans:ENST00000423479.7:0 ENST00000502686.6:0 ENST00000433949.7:0 ENST00000539382.5:0 ENST00000608903.5:0 ENST00000608858.5:0 ENST00000608108.1:0 NM_001269050:0 NM_001269055:0 uc010giw.2:0 uc010gjf.4:0 uc010gjg.5:0 uc010gji.3:0 uc031rui.2:0 uc061xyp.1:0 uc021wff.2:0 DQ778111:2 AF336042:2 DQ778124:2 DQ778125:2 DQ778126:2 DQ778127:2 DQ778128:2 DQ778129:2 BC130486:17 NM_001269043:-20 NM_001269054:-20 NM_001269049:-20 BC060763:-22 AK313990:-33 ENST00000243914.7:-102 uc010gjb.3:-102 AK128070:-102 ENST00000608263.5:233 ENST00000426658.6:233 ENST00000422109.6:233 ENST00000432255.6:233 ENST00000608720.5:233 ENST00000607923.5:233 ENST00000608158.5:233 NM_001269041:233 NM_001269044:233 NR_072975:233 NM_001269048:233 NM_001269052:233 uc010gix.2:233 uc061xym.1:233 uc061xyn.1:233 uc010gjh.2:233 uc021wfe.2:233 uc061xyo.1:233 uc010gjk.3:233 DQ778110:233 DQ778115:233 DQ778116:233 DQ778117:233 DQ778118:233 DQ778121:233 DQ778119:233 DQ778120:233 DQ778114:233 DQ294738:-470 ENST00000371196.6:-472 uc010gjc.2:-472 AY071919:-472



TATA-Box annotation

Distance to TSS:4
Nearest PromoterID:NM_001269055
Entrez ID:140690
Nearest Unigene:Hs.131543
Nearest Refseq:NM_080618
Nearest Ensembl:ENSG00000124092
Gene Name:CCCTC-binding factor like
Gene Alias:BORIS
Gene Description:CCCTC-binding factor like
Gene Type:protein-coding
CpG%:0.11
GC%:0.736318
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
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