Difference between revisions of "TSS:Hg 238265.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000613231.1:239 ENST00000614771.1:239 NR_131157:239 uc061xzg.1:239 uc002xyu.2:239 AK056098:239 |chr=chr20 |cpg_percent=0.135 |distance=239 |distan...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |TMEPAI= | ||
|all_trans=ENST00000613231.1:239 ENST00000614771.1:239 NR_131157:239 uc061xzg.1:239 uc002xyu.2:239 AK056098:239 | |all_trans=ENST00000613231.1:239 ENST00000614771.1:239 NR_131157:239 uc061xzg.1:239 uc002xyu.2:239 AK056098:239 | ||
|chr=chr20 | |chr=chr20 | ||
| Line 6: | Line 7: | ||
|distance_to_tss=39 | |distance_to_tss=39 | ||
|end=57709944 | |end=57709944 | ||
| + | |end_of_center_position=26170797 | ||
|entrez_id=56937 | |entrez_id=56937 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
| − | |gene_alias=STAG1 | + | |gene_alias=STAG1 |
|gene_description="prostate transmembrane protein, androgen induced 1" | |gene_description="prostate transmembrane protein, androgen induced 1" | ||
|gene_id=105416157 | |gene_id=105416157 | ||
| Line 24: | Line 26: | ||
|species=human | |species=human | ||
|start=57709927 | |start=57709927 | ||
| + | |start_of_center_position=26170796 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENST00000613231.1 ENST00000614771.1 NR_131157 uc061xzg.1 uc002xyu.2 AK056098 | |transcript_name=ENST00000613231.1 ENST00000614771.1 NR_131157 uc061xzg.1 uc002xyu.2 AK056098 | ||
Revision as of 15:30, 12 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 26170796 |
|---|---|
| End of the center position in the TSS region: | 26170797 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000613231.1 ENST00000614771.1 NR_131157 uc061xzg.1 uc002xyu.2 AK056098 |
|---|---|
| Distance: | 239 |
| Num_trans: | 6 |
| All_trans: | ENST00000613231.1:239 ENST00000614771.1:239 NR_131157:239 uc061xzg.1:239 uc002xyu.2:239 AK056098:239 |
TATA-Box annotation
| Distance to TSS: | 39 |
|---|---|
| Nearest PromoterID: | NM_020182 |
| Entrez ID: | 56937 |
| Nearest Unigene: | Hs.517155 |
| Nearest Refseq: | NM_020182 |
| Nearest Ensembl: | ENSG00000124225 |
| Gene Name: | NF-kappaB interacting long non-coding RNA |
| Gene Alias: | STAG1 |
| Gene Description: | "prostate transmembrane protein, androgen induced 1" |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
