Difference between revisions of "TSS:Hg 238420.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=X06989:-6 ENST00000474136.5:-14 uc061zhv.1:-14 BC004369:-14 ENST00000354192.7:-15 uc010glj.4:-15 AF282245:-15 BC065529:-19 BC065523:-19 ENST00000348990....") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |ABETA= | ||
| + | |ABPP= | ||
| + | |AD1= | ||
| + | |APPI= | ||
| + | |CTFgamma= | ||
| + | |CVAP= | ||
| + | |PN-II= | ||
| + | |PN2= | ||
|all_trans=X06989:-6 ENST00000474136.5:-14 uc061zhv.1:-14 BC004369:-14 ENST00000354192.7:-15 uc010glj.4:-15 AF282245:-15 BC065529:-19 BC065523:-19 ENST00000348990.9:-35 uc002ymb.4:-35 Y00264:-35 AK297412:-35 AK294534:-35 AK298861:-35 M35675:-38 AK297229:48 AK312326:48 ENST00000357903.7:-55 uc002yma.4:-55 ENST00000358918.7:65 uc021whz.2:65 ENST00000346798.7:78 ENST00000439274.6:78 uc002ylz.4:78 uc011ach.3:78 NM_000484:-88 NM_001136130:-88 NM_001204302:-88 NM_001204303:-88 NM_001204301:-88 NM_201414:-88 NM_201413:-88 NM_001136129:-88 AB384791:107 EU832797:112 GQ129348:112 KJ901289:112 ENST00000359726.7:-396 NM_001136131:-396 uc011aci.3:-396 AK296229:-396 | |all_trans=X06989:-6 ENST00000474136.5:-14 uc061zhv.1:-14 BC004369:-14 ENST00000354192.7:-15 uc010glj.4:-15 AF282245:-15 BC065529:-19 BC065523:-19 ENST00000348990.9:-35 uc002ymb.4:-35 Y00264:-35 AK297412:-35 AK294534:-35 AK298861:-35 M35675:-38 AK297229:48 AK312326:48 ENST00000357903.7:-55 uc002yma.4:-55 ENST00000358918.7:65 uc021whz.2:65 ENST00000346798.7:78 ENST00000439274.6:78 uc002ylz.4:78 uc011ach.3:78 NM_000484:-88 NM_001136130:-88 NM_001204302:-88 NM_001204303:-88 NM_001204301:-88 NM_201414:-88 NM_201413:-88 NM_001136129:-88 AB384791:107 EU832797:112 GQ129348:112 KJ901289:112 ENST00000359726.7:-396 NM_001136131:-396 uc011aci.3:-396 AK296229:-396 | ||
|chr=chr21 | |chr=chr21 | ||
| Line 6: | Line 14: | ||
|distance_to_tss=88 | |distance_to_tss=88 | ||
|end=26170732 | |end=26170732 | ||
| + | |end_of_center_position=46464849 | ||
|entrez_id=351 | |entrez_id=351 | ||
|gc_percent=0.771144 | |gc_percent=0.771144 | ||
| − | |gene_alias=AAA | + | |gene_alias=AAA |
|gene_description=amyloid beta precursor protein | |gene_description=amyloid beta precursor protein | ||
|gene_id=351 | |gene_id=351 | ||
| Line 24: | Line 33: | ||
|species=human | |species=human | ||
|start=26170731 | |start=26170731 | ||
| + | |start_of_center_position=46464848 | ||
|strand=- | |strand=- | ||
|transcript_name=X06989 | |transcript_name=X06989 | ||
Revision as of 18:05, 12 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 46464848 |
|---|---|
| End of the center position in the TSS region: | 46464849 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | X06989 |
|---|---|
| Distance: | -6 |
| Num_trans: | 42 |
| All_trans: | X06989:-6 ENST00000474136.5:-14 uc061zhv.1:-14 BC004369:-14 ENST00000354192.7:-15 uc010glj.4:-15 AF282245:-15 BC065529:-19 BC065523:-19 ENST00000348990.9:-35 uc002ymb.4:-35 Y00264:-35 AK297412:-35 AK294534:-35 AK298861:-35 M35675:-38 AK297229:48 AK312326:48 ENST00000357903.7:-55 uc002yma.4:-55 ENST00000358918.7:65 uc021whz.2:65 ENST00000346798.7:78 ENST00000439274.6:78 uc002ylz.4:78 uc011ach.3:78 NM_000484:-88 NM_001136130:-88 NM_001204302:-88 NM_001204303:-88 NM_001204301:-88 NM_201414:-88 NM_201413:-88 NM_001136129:-88 AB384791:107 EU832797:112 GQ129348:112 KJ901289:112 ENST00000359726.7:-396 NM_001136131:-396 uc011aci.3:-396 AK296229:-396 |
TATA-Box annotation
| Distance to TSS: | 88 |
|---|---|
| Nearest PromoterID: | NM_000484 |
| Entrez ID: | 351 |
| Nearest Unigene: | Hs.434980 |
| Nearest Refseq: | NM_000484 |
| Nearest Ensembl: | ENSG00000142192 |
| Gene Name: | amyloid beta precursor protein |
| Gene Alias: | AAA |
| Gene Description: | amyloid beta precursor protein |
| Gene Type: | protein-coding |
| CpG%: | 0.155 |
| GC%: | 0.771144 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
