Difference between revisions of "TSS:Mm 64376.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=NM_001136071:-12 NM_001271510:-12 NM_001271509:-12 uc009knc.3:-12 uc009knb.3:-12 uc009knd.3:-12 D49691:-12 ENSMUST00000018963.10:14 ENSMUST00000105968.7...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |WP34= | ||
|all_trans=NM_001136071:-12 NM_001271510:-12 NM_001271509:-12 uc009knc.3:-12 uc009knb.3:-12 uc009knd.3:-12 D49691:-12 ENSMUST00000018963.10:14 ENSMUST00000105968.7:-15 BC044736:25 ENSMUST00000105967.7:32 AK003081:32 M89956:38 S74179:67 | |all_trans=NM_001136071:-12 NM_001271510:-12 NM_001271509:-12 uc009knc.3:-12 uc009knb.3:-12 uc009knd.3:-12 D49691:-12 ENSMUST00000018963.10:14 ENSMUST00000105968.7:-15 BC044736:25 ENSMUST00000105967.7:32 AK003081:32 M89956:38 S74179:67 | ||
|chr=chr7 | |chr=chr7 | ||
| Line 6: | Line 7: | ||
|distance_to_tss=16 | |distance_to_tss=16 | ||
|end=142460832 | |end=142460832 | ||
| + | |end_of_center_position=142460828 | ||
|entrez_id=16985 | |entrez_id=16985 | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
| − | |gene_alias=Lsp-1 | + | |gene_alias=Lsp-1 |
|gene_description=lymphocyte specific 1 | |gene_description=lymphocyte specific 1 | ||
|gene_id=16985 | |gene_id=16985 | ||
| Line 22: | Line 24: | ||
|nearest_unigene=Mm.234003 | |nearest_unigene=Mm.234003 | ||
|num_trans=14 | |num_trans=14 | ||
| + | |p50= | ||
| + | |pp52= | ||
|species=mouse | |species=mouse | ||
|start=142460823 | |start=142460823 | ||
| + | |start_of_center_position=142460827 | ||
|strand=+ | |strand=+ | ||
|transcript_name=NM_001136071 NM_001271510 NM_001271509 uc009knc.3 uc009knb.3 uc009knd.3 D49691 | |transcript_name=NM_001136071 NM_001271510 NM_001271509 uc009knc.3 uc009knb.3 uc009knd.3 D49691 | ||
Revision as of 10:13, 13 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 142460827 |
|---|---|
| End of the center position in the TSS region: | 142460828 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_001136071 NM_001271510 NM_001271509 uc009knc.3 uc009knb.3 uc009knd.3 D49691 |
|---|---|
| Distance: | -12 |
| Num_trans: | 14 |
| All_trans: | NM_001136071:-12 NM_001271510:-12 NM_001271509:-12 uc009knc.3:-12 uc009knb.3:-12 uc009knd.3:-12 D49691:-12 ENSMUST00000018963.10:14 ENSMUST00000105968.7:-15 BC044736:25 ENSMUST00000105967.7:32 AK003081:32 M89956:38 S74179:67 |
TATA-Box annotation
| Distance to TSS: | 16 |
|---|---|
| Nearest PromoterID: | NM_001136071 |
| Entrez ID: | 16985 |
| Nearest Unigene: | Mm.234003 |
| Nearest Refseq: | NM_019391 |
| Nearest Ensembl: | ENSMUSG00000018819 |
| Gene Name: | lymphocyte specific 1 |
| Gene Alias: | Lsp-1 |
| Gene Description: | lymphocyte specific 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
