Difference between revisions of "TSS:Mm 129075.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000062002.4:397 NM_194350:397 uc007whe.1:397 BC156190:398 |chr=chr15 |cpg_percent=0.135 |distance=397 |distance_to_tss=-398 |end=75748322 |entr...") |
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| Line 6: | Line 6: | ||
|distance_to_tss=-398 | |distance_to_tss=-398 | ||
|end=75748322 | |end=75748322 | ||
| + | |end_of_center_position=75748321 | ||
|entrez_id=378435 | |entrez_id=378435 | ||
|gc_percent=0.80597 | |gc_percent=0.80597 | ||
| Line 24: | Line 25: | ||
|species=mouse | |species=mouse | ||
|start=75748318 | |start=75748318 | ||
| + | |start_of_center_position=75748320 | ||
|strand=- | |strand=- | ||
|tata_box="-37(GTCTCTATAAAG,-,0.00),-35(CTCTATAAAGGC,+,0.00),-35(CTCTATAAAGGC,-,0.00)" | |tata_box="-37(GTCTCTATAAAG,-,0.00),-35(CTCTATAAAGGC,+,0.00),-35(CTCTATAAAGGC,-,0.00)" | ||
Revision as of 16:44, 13 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 75748320 |
|---|---|
| End of the center position in the TSS region: | 75748321 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000062002.4 NM_194350 uc007whe.1 |
|---|---|
| Distance: | 397 |
| Num_trans: | 4 |
| All_trans: | ENSMUST00000062002.4:397 NM_194350:397 uc007whe.1:397 BC156190:398 |
TATA-Box annotation
| Distance to TSS: | -398 |
|---|---|
| Nearest PromoterID: | NM_194350 |
| Entrez ID: | 378435 |
| Nearest Unigene: | Mm.309589 |
| Nearest Refseq: | NM_194350 |
| Nearest Ensembl: | ENSMUSG00000047591 |
| Gene Name: | "v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)" |
| Gene Alias: | RIPE3b1 |
| Gene Description: | "v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)" |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.80597 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-37(GTCTCTATAAAG,-,0.00),-35(CTCTATAAAGGC,+,0.00),-35(CTCTATAAAGGC,-,0.00)" |
