Difference between revisions of "TSS:Hg 136496.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000381116.5:-22 uc001urk.4:-22 AF265440:-22 ENST00000381120.7:-32 uc001urj.4:-32 BC046166:-32 ENST00000484342.2:-45 uc058wbi.1:-45 ENST00000485650...") |
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| Line 6: | Line 6: | ||
|distance_to_tss=65 | |distance_to_tss=65 | ||
|end=27450542 | |end=27450542 | ||
| + | |end_of_center_position=27450538 | ||
|entrez_id=219402 | |entrez_id=219402 | ||
|gc_percent=0.636816 | |gc_percent=0.636816 | ||
| Line 24: | Line 25: | ||
|species=human | |species=human | ||
|start=27450532 | |start=27450532 | ||
| + | |start_of_center_position=27450537 | ||
|strand=- | |strand=- | ||
|tata_box="-86(TTCCTTTAAAGG,-,0.00),-85(TCCTTTAAAGGA,+,0.00),-85(TCCTTTAAAGGA,-,0.00),-84(CCTTTAAAGGAC,+,0.00)" | |tata_box="-86(TTCCTTTAAAGG,-,0.00),-85(TCCTTTAAAGGA,+,0.00),-85(TCCTTTAAAGGA,-,0.00),-84(CCTTTAAAGGAC,+,0.00)" | ||
Revision as of 16:58, 13 May 2019
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 27450537 |
|---|---|
| End of the center position in the TSS region: | 27450538 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000381116.5 uc001urk.4 AF265440 |
|---|---|
| Distance: | -22 |
| Num_trans: | 28 |
| All_trans: | ENST00000381116.5:-22 uc001urk.4:-22 AF265440:-22 ENST00000381120.7:-32 uc001urj.4:-32 BC046166:-32 ENST00000484342.2:-45 uc058wbi.1:-45 ENST00000485650.5:-49 uc058wbg.1:-49 NM_001166263:-60 NM_152912:-60 DQ575760:238 ENST00000464753.1:334 uc058wbk.1:334 NM_001166261:336 ENST00000460973.5:337 uc058wbd.1:337 NM_001166262:344 BC039599:345 ENST00000493719.5:369 uc058wbf.1:369 ENST00000485959.5:390 uc058wbh.1:390 ENST00000461838.5:402 uc058wbc.1:402 ENST00000471771.5:492 uc058wbe.1:492 |
TATA-Box annotation
| Distance to TSS: | 65 |
|---|---|
| Nearest PromoterID: | NM_001166263 |
| Entrez ID: | 219402 |
| Nearest Unigene: | Hs.534582 |
| Nearest Refseq: | NM_152912 |
| Nearest Ensembl: | ENSG00000122033 |
| Gene Name: | mitochondrial translational initiation factor 3 |
| Gene Alias: | IF3mt |
| Gene Description: | mitochondrial translational initiation factor 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-86(TTCCTTTAAAGG,-,0.00),-85(TCCTTTAAAGGA,+,0.00),-85(TCCTTTAAAGGA,-,0.00),-84(CCTTTAAAGGAC,+,0.00)" |
