Difference between revisions of "TSS:Hg 134537.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000302979.4:-34 uc001uro.4:-34 ENST00000399697.7:315 NM_015972:315 NM_152705:315 uc001urp.4:315 BC018528:402 ENST00000489647.4:406 uc058wbo.1:406...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |POLR1C= | ||
| + | |RPA16= | ||
| + | |RPA9= | ||
| + | |RPAC2= | ||
| + | |RPC16= | ||
| + | |RPO1-3= | ||
| + | |TCS2= | ||
|all_trans=ENST00000302979.4:-34 uc001uro.4:-34 ENST00000399697.7:315 NM_015972:315 NM_152705:315 uc001urp.4:315 BC018528:402 ENST00000489647.4:406 uc058wbo.1:406 BC015319:406 ENST00000630983.1:411 uc058wbp.1:411 BC000889:411 BC006972:411 BC054519:422 ENST00000465887.2:428 uc058wbq.1:428 AF077044:428 AK311833:428 AK097973:428 AK000623:429 ENST00000399696.3:490 uc058wbr.1:490 | |all_trans=ENST00000302979.4:-34 uc001uro.4:-34 ENST00000399697.7:315 NM_015972:315 NM_152705:315 uc001urp.4:315 BC018528:402 ENST00000489647.4:406 uc058wbo.1:406 BC015319:406 ENST00000630983.1:411 uc058wbp.1:411 BC000889:411 BC006972:411 BC054519:422 ENST00000465887.2:428 uc058wbq.1:428 AF077044:428 AK311833:428 AK097973:428 AK000623:429 ENST00000399696.3:490 uc058wbr.1:490 | ||
|chr=chr13 | |chr=chr13 | ||
| Line 6: | Line 13: | ||
|distance_to_tss=-319 | |distance_to_tss=-319 | ||
|end=27621464 | |end=27621464 | ||
| + | |end_of_center_position=27621460 | ||
|entrez_id=51082 | |entrez_id=51082 | ||
|gc_percent=0.597015 | |gc_percent=0.597015 | ||
| − | |gene_alias=AC19 | + | |gene_alias=AC19 |
|gene_description=RNA polymerase I subunit D | |gene_description=RNA polymerase I subunit D | ||
|gene_id=51082 | |gene_id=51082 | ||
| Line 24: | Line 32: | ||
|species=human | |species=human | ||
|start=27621455 | |start=27621455 | ||
| + | |start_of_center_position=27621459 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENST00000302979.4 uc001uro.4 | |transcript_name=ENST00000302979.4 uc001uro.4 | ||
Revision as of 16:59, 13 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 27621459 |
|---|---|
| End of the center position in the TSS region: | 27621460 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000302979.4 uc001uro.4 |
|---|---|
| Distance: | -34 |
| Num_trans: | 23 |
| All_trans: | ENST00000302979.4:-34 uc001uro.4:-34 ENST00000399697.7:315 NM_015972:315 NM_152705:315 uc001urp.4:315 BC018528:402 ENST00000489647.4:406 uc058wbo.1:406 BC015319:406 ENST00000630983.1:411 uc058wbp.1:411 BC000889:411 BC006972:411 BC054519:422 ENST00000465887.2:428 uc058wbq.1:428 AF077044:428 AK311833:428 AK097973:428 AK000623:429 ENST00000399696.3:490 uc058wbr.1:490 |
TATA-Box annotation
| Distance to TSS: | -319 |
|---|---|
| Nearest PromoterID: | NM_152705 |
| Entrez ID: | 51082 |
| Nearest Unigene: | Hs.507584 |
| Nearest Refseq: | NM_015972 |
| Nearest Ensembl: | ENSG00000186184 |
| Gene Name: | polymerase (RNA) I subunit D |
| Gene Alias: | AC19 |
| Gene Description: | RNA polymerase I subunit D |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.597015 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
